# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-29 100.1 0.2 4.2e-11 41.1 0.0 4.2 3 sp|P36056|RT22_YEAST Probable S-adenosyl-L-methionine-depend
------ inclusion threshold ------
0.024 12.4 0.0 0.035 11.8 0.0 1.2 1 sp|P38892|CRG1_YEAST Probable S-adenosylmethionine-dependent
Domain annotation for each sequence (and alignments):
>> sp|P36056|RT22_YEAST Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial OS=Saccha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.1 0.0 1.4e-14 4.2e-11 2 156 .. 126 326 .. 125 334 .. 0.69
2 ! 16.4 0.0 4.7e-07 0.0014 163 200 .. 368 417 .. 357 425 .. 0.77
3 ! 36.1 0.0 4.7e-13 1.4e-09 223 274 .. 465 545 .. 433 546 .. 0.74
Alignments for each domain:
== domain 1 score: 41.1 bits; conditional E-value: 1.4e-14
Rsm22 2 eesiaYalarlpatyavlrrvLdelaerv..pdflPkslldvgegpgtalwaasel....we.eleevlvidaseelle....iskela 79
+e+ a ++ + ++y + ++L+el++rv ++f+P+ +ldvg gp+t+++a +++ ++ +l++++ + +e + +s++l
sp|P36056|RT22_YEAST 126 MEVDAHIASIFLQNYGSIFQSLKELQKRVgpDNFKPQRILDVGYGPATGIVALNDIlgpnYRpDLKDAVILGNAEMQERakiiLSRQLN 214
678899999999***************986579**********************9333334455566666554432211111344333 PP
Rsm22 80 ...adapelkeaalrrsvirealeleea...........................dLviisyvLleled.esreklvk....nlWakas 133
+ +e+ +++++++ r +++e+ dL+i+++ Ll d ++ + v+ + + ++
sp|P36056|RT22_YEAST 215 evvDTVEENVSTEKEQETDRRNKNFQEDehigevmtkkinimtnlrssipaskeyDLIILTHQLLH--DgNQFPIQVDenieHYLNILA 301
00023333333334444444555666667777779999************************9965..334444444400004444444 PP
Rsm22 134 k..ilvivEeGtpaGfrrvleaRea 156
+vi+E G p Gf+ + aR+
sp|P36056|RT22_YEAST 302 PggHIVIIERGNPMGFEIIARARQI 326
3679*******************96 PP
== domain 2 score: 16.4 bits; conditional E-value: 4.7e-07
Rsm22 163 hivAPCPHeaaCPlvate............dwChFsqrvaRlslhrlaks 200
+++APCPH+ +CPl+ ++ +C+F ++++R + + k+
sp|P36056|RT22_YEAST 368 KVIAPCPHQRKCPLQVGNpnfythkegkdlKFCNFQKSIKRPKFSIELKK 417
79************976554555555666668888888888877776665 PP
== domain 3 score: 36.1 bits; conditional E-value: 4.7e-13
Rsm22 223 a............................aaRvvrptkvrskkvlidlCsedetlqrlvvtKrkG.eaykaArkaeWGDrl 274
+ ++R++ + +r+++v++dlC+ ++l++ +v ++ + y+ Ark++ GD++
sp|P36056|RT22_YEAST 465 TlkeikklrnenvngkydigslgddtqnsWPRIINDPVKRKGHVMMDLCAPSGELEKWTVSRSFSkQIYHDARKSKKGDLW 545
24444444444445555555555555555*********************************65549*************9 PP
>> sp|P38892|CRG1_YEAST Probable S-adenosylmethionine-dependent methyltransferase CRG1 OS=Saccharomyces cerevisiae (str
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 1.2e-05 0.035 36 109 .. 40 112 .. 11 126 .. 0.85
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 1.2e-05
Rsm22 36 kslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleea..dLvii 109
ksl+d+g g+g a+++++ ++ ev+ id s+++l+i+++ +++ k++++ + +++ + ++ d+vi
sp|P38892|CRG1_YEAST 40 KSLVDIGCGTGKATFVVEPYFK---EVIGIDPSSAMLSIAEKETNERRLDKKIRFINAPGEDLSSIRPEsvDMVIS 112
799**************99886...7899**************999999999988888887777776666688775 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 171 (0.0282691); expected 121.0 (0.02)
Passed bias filter: 140 (0.0231443); expected 121.0 (0.02)
Passed Vit filter: 16 (0.00264507); expected 6.0 (0.001)
Passed Fwd filter: 2 (0.000330633); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03
# Mc/sec: 26916.66
//
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