# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-71 239.5 0.1 1.6e-70 238.1 0.0 1.7 2 tr|Q22CT3|Q22CT3_TETTS Small ribosomal subunit Rsm22 OS=Tetr
------ inclusion threshold ------
0.012 15.5 0.0 0.016 15.1 0.0 1.1 1 tr|Q239D4|Q239D4_TETTS Cyclopropane-fatty-acyl-phospholipid
0.027 14.3 0.1 0.054 13.3 0.1 1.5 1 tr|I7M118|I7M118_TETTS Uncharacterized protein OS=Tetrahymen
Domain annotation for each sequence (and alignments):
>> tr|Q22CT3|Q22CT3_TETTS Small ribosomal subunit Rsm22 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_0
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.2 0.65 5.8e+03 75 107 .. 167 200 .. 144 203 .. 0.61
2 ! 238.1 0.0 1.8e-74 1.6e-70 3 275 .] 228 524 .. 226 524 .. 0.93
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 0.65
Rsm22 75 skel.aadapelkeaalrrsvirealeleeadLv 107
++l a++a+++k ++ +++ ++ e e++dLv
tr|Q22CT3|Q22CT3_TETTS 167 KRKLkAEKAQNNKDEETQQEKDQNSTEQESDDLV 200
3333144556666666777777777777777887 PP
== domain 2 score: 238.1 bits; conditional E-value: 1.8e-74
Rsm22 3 esiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaa 89
s+aY+l + p t++v +r+L+e++ r+p+f P+++ld+g+g g + +a +++++e ++++ + s+++++++k++++d+p+l ++
tr|Q22CT3|Q22CT3_TETTS 228 SSVAYLLRKAPHTFSVACRILTEIRYRMPNFNPQTFLDFGAGLGSGSLAFQDIFPECKNIVACEPSKNMRKLGKHMTQDIPNLVYVE 314
799********************************************************************************9994 PP
Rsm22 90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakask..ilvivEeGtpaGfrrvleaReal....kaagfhivA 166
+++ l +a d+v is+vL+e+ e r+ +++ lW+k++k i++ vE+Gtp+Gfr ++ R + k ++ +ivA
tr|Q22CT3|Q22CT3_TETTS 315 NL----AQTISLPYAvefDIVFISHVLQEVPSvEARKLIIDSLWNKVKKggIMIFVENGTPKGFRFAHDFRRYIlenkKSDDPYIVA 397
44....455677777777**************9***************9999*******************999899889999**** PP
Rsm22 167 PCPHeaaCPlvate.dwChFsqrvaRlslhrlak.sasvpvedekfsy..vakerqprasa.............aaRvvrptkvrsk 236
PCPH+ CPl+a+ +wChF q+v + + k +++++++ekf + ++k+ ++++ + R++ p + rsk
tr|Q22CT3|Q22CT3_TETTS 398 PCPHQGPCPLAAKAdTWCHFEQKVGKYPKSVFSKlPTEKQFDNEKFCFmvIQKGVKQEERDednsqtfaeksffWDRILFPIMRRSK 484
************9989******************989***********875554444433367789********************* PP
Rsm22 237 kvlidlCsedetlqrlvvtKrkG.eaykaArkaeWGDrlp 275
+ + dlC++d+ ++r+v+ K++G e+yk+ +k++WGD++p
tr|Q22CT3|Q22CT3_TETTS 485 HFVYDLCTRDGDFERRVTAKSHGdEEYKTIKKLSWGDLWP 524
***********************999*************7 PP
>> tr|Q239D4|Q239D4_TETTS Cyclopropane-fatty-acyl-phospholipid synthase OS=Tetrahymena thermophila (strain SB210) OX=31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.1 0.0 1.8e-06 0.016 30 128 .. 45 143 .. 26 155 .. 0.77
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 1.8e-06
Rsm22 30 vpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLlel 116
+d s+ld+g g+g l+ + +++ ++l +d e+ + +++l +d+++++ l++ +a + + d+v s+ +
tr|Q239D4|Q239D4_TETTS 45 KKDVSLDSILDIGIGTGLPLYKIASKFPQNAKILGVDIDENYVKAAQKLFKDKKNVEIR-LQNFYELDAKKEGQFDIVLFSFSFMLM 130
45666789********************************************9988655.677666666666667999999988877 PP
Rsm22 117 edesrek.lvknl 128
+ ++++ l k+l
tr|Q239D4|Q239D4_TETTS 131 PEREKAIaLAKQL 143
7755544034444 PP
>> tr|I7M118|I7M118_TETTS Uncharacterized protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_0040426
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.3 0.1 6e-06 0.054 18 104 .. 221 307 .. 215 347 .. 0.85
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 6e-06
Rsm22 18 vlrrvLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleea 104
+ + L+e++++ + f ++l d+ g+ +++++++++ ++++ se+ + s+e+ ++ ++++e ++ ++ e+ e+
tr|I7M118|I7M118_TETTS 221 TVDSQLEEIKKKGESFYDENLEDIEHQLGILENDFNQMFKQTRKNILVQISENNSNQSEEMSKSLHKIQEMYCCGKLKKNISEFIES 307
57889****************************************************************998877777766666554 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 26971 (16912921 residues searched)
Passed MSV filter: 1338 (0.0496088); expected 539.4 (0.02)
Passed bias filter: 781 (0.028957); expected 539.4 (0.02)
Passed Vit filter: 63 (0.00233584); expected 27.0 (0.001)
Passed Fwd filter: 3 (0.000111231); expected 0.3 (1e-05)
Initial search space (Z): 26971 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.40u 0.01s 00:00:00.41 Elapsed: 00:00:00.13
# Mc/sec: 35777.33
//
[ok]