# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    9.7e-56  189.5   0.0    1.3e-55  189.0   0.0    1.2  1  tr|F6RAL5|F6RAL5_XENTR  Methyltransferase-like 17 OS=Xenopus 


Domain annotation for each sequence (and alignments):
>> tr|F6RAL5|F6RAL5_XENTR  Methyltransferase-like 17 OS=Xenopus tropicalis OX=8364 GN=mettl17 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.0   5.5e-60   1.3e-55      20     275 .]     162     431 ..     142     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 5.5e-60
                   Rsm22  20 rrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaalrrsvirealeleea. 104
                             +r  +++++r+p+f+P++lld+g+g+g ++waa++lw  +l e++ +d +++++++s+ +++   e  e +   +  r+ l l ++ 
  tr|F6RAL5|F6RAL5_XENTR 162 QRKEEAIHQRCPEFKPQTLLDFGSGTGSVTWAANNLWGkSLVEYMCVDSAAPMNRLSELVLKGGSESGEMHISGVYFRQFLPLSPKv 248
                             5666899*******************************99*******************************************9999 PP

                   Rsm22 105 ..dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfhivAPCPHeaaCPlvat 179
                               dLv+ ++ L++l   ++rek+v++lW+k+   lv+vE Gt++G+++++eaR+ +          ++  ++ APCPH++ CP + +
  tr|F6RAL5|F6RAL5_XENTR 249 qyDLVVSAFSLTDLPSlSEREKVVQALWRKTGGFLVLVESGTKEGHQLLMEARDIVlqkedkeiwDHRPPQVFAPCPHQMPCPKLSN 335
                             9*****************************************************998876665544555689***********9999 PP

                   Rsm22 180 e..dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqprasa.aaRvvrptkvrskkvlidlCsedetlqrlvvtK.rkG.ea 261
                                 +C+F q+++ l  +   ++    +  ekfs++  +r+ +  a ++R++ +  +r ++v +++C  d++l+++v+t  r+G ++
  tr|F6RAL5|F6RAL5_XENTR 336 RlqMPCNFIQKYQPLPFNWNPHE---RW--EKFSFIIISRGYVGGAyWPRIISHVLSRPRHVHCHMCCADGELKHEVITArRHGrDL 417
                             8889**********999988877...45..79***888888776544*******************************9989**999 PP

                   Rsm22 262 ykaArkaeWGDrlp 275
                             y++Ar++eWGDrlp
  tr|F6RAL5|F6RAL5_XENTR 418 YRCARNSEWGDRLP 431
                             ***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        24182  (11782085 residues searched)
Passed MSV filter:                       623  (0.025763); expected 483.6 (0.02)
Passed bias filter:                      480  (0.0198495); expected 483.6 (0.02)
Passed Vit filter:                        39  (0.00161277); expected 24.2 (0.001)
Passed Fwd filter:                         1  (4.13531e-05); expected 0.2 (1e-05)
Initial search space (Z):              24182  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.10
# Mc/sec: 32400.73
//
[ok]