# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-28 98.6 0.0 1.1e-27 98.2 0.0 1.1 1 tr|A0A1X7TZJ8|A0A1X7TZJ8_AMPQE Uncharacterized protein OS=Amphi
2.7e-27 96.9 0.0 5.3e-27 96.0 0.0 1.5 1 tr|A0A1X7VLR0|A0A1X7VLR0_AMPQE Uncharacterized protein OS=Amphi
8.3e-25 88.9 0.0 1.1e-24 88.5 0.0 1.1 1 tr|A0A1X7UDQ0|A0A1X7UDQ0_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.052 15.0 0.0 0.098 14.1 0.0 1.3 1 tr|A0A1X7VLF5|A0A1X7VLF5_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7TZJ8|A0A1X7TZJ8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 98.2 0.0 1e-31 1.1e-27 4 141 .. 42 189 .. 40 190 .. 0.88
Alignments for each domain:
== domain 1 score: 98.2 bits; conditional E-value: 1e-31
EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEES CS
SpoU_methylase 4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvats 82
++l++++dp+N+Gai+R+a+ fg+++++++++ s +l+p + +++aga e l ++ ++++ ++lk ++g+++++t
tr|A0A1X7TZJ8|A0A1X7TZJ8_AMPQE 42 LLLYHVQDPMNFGAIIRSAYFFGVDRILVTNKSSC-PLSPVVSKSSAGAMEMLSIHSISDVISLLKVAADKGWDILGTV 119
789**************************998887.******************************************8 PP
T..T-SEGC.....CSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE--....--TTSSS--HHHHHHHHH CS
SpoU_methylase 83 l..kgksls.....eidlkekvalvfGnEdkGlsnelleladrlvkIp....msgeveSLNvavAvaill 141
+ k +++s + ++ ++++l++GnE++Gl++e+ + +++l++I s+ ++SLNv+vA++ill
tr|A0A1X7TZJ8|A0A1X7TZJ8_AMPQE 120 SpnKFEHFSvisasDHKVIRPTMLIVGNEGHGLTKEVCSCCTKLLTINpkrsLSPGFDSLNVSVATGILL 189
8654445554433344555****************************7333357899***********97 PP
>> tr|A0A1X7VLR0|A0A1X7VLR0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.0 0.0 4.9e-31 5.3e-27 2 141 .. 1456 1597 .. 1455 1598 .. 0.94
Alignments for each domain:
== domain 1 score: 96.0 bits; conditional E-value: 4.9e-31
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEE..SSHHHHHHHHCCCTE CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvv..dsleealkelkeegf 76
l++v i+++ NlG ++Rt+++fg+ elvl + ++ l ++e+k +++ a+++l++ +v ++l+ +l ++++g+
tr|A0A1X7VLR0|A0A1X7VLR0_AMPQE 1456 LVLVASLINKQPNLGGLCRTCEIFGVAELVLGS-TAV-LEEKEFKSLSVTAEKWLKISQVkpSELSTYLLSMRRKGY 1530
6789999************************65.555.89****************9998667999*********** PP
EEEEEST..T-SEGCCSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
SpoU_methylase 77 alvatsl..kgkslseidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
+lv++++ ++k++++++++ k++l++GnE++G++ el+ +d++v+Ip+ g ++SLNv+v+ ai++
tr|A0A1X7VLR0|A0A1X7VLR0_AMPQE 1531 TLVGVEQtaHSKQINNYQIPVKTVLLLGNEREGIPVELIHSLDECVEIPQFGVIRSLNVHVSGAIVV 1597
*****9999999*****************************************************97 PP
>> tr|A0A1X7UDQ0|A0A1X7UDQ0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.5 0.0 9.7e-29 1.1e-24 2 142 .] 34 180 .. 33 180 .. 0.88
Alignments for each domain:
== domain 1 score: 88.5 bits; conditional E-value: 9.7e-29
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSC.TCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEE CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsa.dllnpeakraaagalevlelkvvdsleealkelkeegfalv 79
+ ++l++i d gN ai+Rt++ +g+++l+ v+ + np+ r+ +ga++++ ++++ ++++++++lk +g+ +v
tr|A0A1X7UDQ0|A0A1X7UDQ0_AMPQE 34 VSILLDNILDSGNENAIIRTMDGMGVQTLHRVSYGPItKAHNPKETRTDSGARKWISIHKWRDINNCIDHLKTTGTMIV 112
6799**************************999755524699********************************97776 PP
EEST....T-SEGCCSHHH.TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 80 atsl....kgkslseidlk.ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
+ ++ l+e++l+ ++v++ fGnE++G+s++ll++ d + ++pm g + S Nv+v+ +++ly
tr|A0A1X7UDQ0|A0A1X7UDQ0_AMPQE 113 SSYCrpevHTPFLHELALPdKPVVFAFGNETEGISDDLLKRSDLTFRLPMVGFTTSYNVSVSIGMCLY 180
66552323333444778889**********************************************98 PP
>> tr|A0A1X7VLF5|A0A1X7VLF5_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.1 0.0 9e-06 0.098 12 55 .. 331 376 .. 326 382 .. 0.85
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 9e-06
HHHHHHHHHHHH.HTT-SEEEEESG.SSCTCGSHHHHHHCTTHHHH CS
SpoU_methylase 12 pgNlGaiaRtak.afgaselvlvkp.rsadllnpeakraaagalev 55
+N+GaiaR+++ ++g++++v+v++ + ++l+++++ a++++++
tr|A0A1X7VLF5|A0A1X7VLF5_AMPQE 331 TNNIGAIARMCAsIVGIERVVFVGNyLCDNVLSTQMLSYAMEYWSQ 376
68********97368********98567788999******999975 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 856 (0.0197076); expected 868.7 (0.02)
Passed bias filter: 724 (0.0166686); expected 868.7 (0.02)
Passed Vit filter: 50 (0.00115115); expected 43.4 (0.001)
Passed Fwd filter: 4 (9.20916e-05); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.11
# Mc/sec: 18997.82
//
[ok]