# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-30 105.8 0.0 3.1e-30 105.2 0.0 1.2 1 tr|H9G6C9|H9G6C9_ANOCA Mitochondrial rRNA methyltransferase
3.8e-23 82.3 0.0 1.8e-13 50.9 0.0 2.2 2 tr|H9GMT3|H9GMT3_ANOCA Uncharacterized protein OS=Anolis car
5e-23 81.9 0.0 1.2e-22 80.7 0.0 1.6 1 tr|G1K946|G1K946_ANOCA TAR (HIV-1) RNA binding protein 1 OS=
------ inclusion threshold ------
0.011 16.0 0.0 0.25 11.5 0.0 2.4 2 tr|H9G369|H9G369_ANOCA Uncharacterized protein OS=Anolis car
0.051 13.8 0.0 0.088 13.0 0.0 1.3 1 tr|H9G6C2|H9G6C2_ANOCA Short chain dehydrogenase/reductase f
Domain annotation for each sequence (and alignments):
>> tr|H9G6C9|H9G6C9_ANOCA Mitochondrial rRNA methyltransferase 1 OS=Anolis carolinensis OX=28377 GN=MRM1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.2 0.0 8.5e-34 3.1e-30 4 142 .] 159 308 .. 157 308 .. 0.90
Alignments for each domain:
== domain 1 score: 105.2 bits; conditional E-value: 8.5e-34
EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEGC. CS
SpoU_methylase 4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksls. 89
++l++i+dp+NlGa++R+a +g++++v+++++s +l+p + +a++ga evl++ +d+l +lk +eg+++++t +++k +
tr|H9G6C9|H9G6C9_ANOCA 159 LALEGIQDPMNLGAVLRSAHFLGVDGIVMSRKNSC-PLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSKEGWEVLGTVAHAKAQDg 244
789**************************998888.******************************************997775443 PP
.......CSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE-....---TTSSS--HHHHHHHHHH CS
SpoU_methylase 90 .......eidlkekvalvfGnEdkGlsnelleladrlvkI....pmsgeveSLNvavAvailly 142
+++++++++lv+GnE++Gls+e+ +l++r+++I ++ +eSLNv+vA++ill+
tr|H9G6C9|H9G6C9_ANOCA 245 ipvvsclDFRWMKPTILVLGNEGHGLSPETKSLCRRMLTIapgrELEPGIESLNVSVAAGILLH 308
344456677999****************************4333368999***********985 PP
>> tr|H9GMT3|H9GMT3_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=mrm3 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.9 0.0 4.8e-17 1.8e-13 2 63 .. 191 249 .. 190 268 .. 0.91
2 ! 29.2 0.0 2.4e-10 8.8e-07 95 142 .] 336 387 .. 313 387 .. 0.85
Alignments for each domain:
== domain 1 score: 50.9 bits; conditional E-value: 4.8e-17
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESS CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvds 63
l +++++i+dpgNlG+i+R+a+ +g+s+++lvk ++d ++p+++ra++ga++ l++ v++
tr|H9GMT3|H9GMT3_ANOCA 191 LSLICDNIRDPGNLGTILRSAAGAGCSRVLLVK-GCVDAWEPKVLRAGMGAHFRLPI--VSN 249
6799****************************9.**********************5..444 PP
== domain 2 score: 29.2 bits; conditional E-value: 2.4e-10
TTEEEEEEBTTTBS-HHHHCTSS....EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 95 ekvalvfGnEdkGlsnellelad....rlvkIpmsgeveSLNvavAvailly 142
+va+v+G E++G+s+e+++la+ r + Ip+++ v+SLN a+A++ill+
tr|H9GMT3|H9GMT3_ANOCA 336 LSVAVVIGGETHGVSEEAMRLAQdtggRRLLIPIAPGVDSLNAAMAASILLF 387
689*******************955556899******************985 PP
>> tr|G1K946|G1K946_ANOCA TAR (HIV-1) RNA binding protein 1 OS=Anolis carolinensis OX=28377 GN=TARBP1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.7 0.0 3.2e-26 1.2e-22 2 127 .. 1426 1553 .. 1425 1556 .. 0.90
Alignments for each domain:
== domain 1 score: 80.7 bits; conditional E-value: 3.2e-26
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEES..SHHHHHHHHCCCTEEEEEESTT CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvd..sleealkelkeegfalvatslk 84
livv +++p+NlG ++Rt+++fg+s+l++ + + + +++++ ++++a+++l l +v+ +l+++l++ k eg++++++++
tr|G1K946|G1K946_ANOCA 1426 LIVVASLLDKPTNLGGLCRTCEIFGVSALIVGS-IHY-IHDKQFQYLSVSAEQWLSLLEVKpfQLADYLEQKKIEGYTIIGVEQT 1508
7999999*******************9999966.554.899***************98886347899*****************6 PP
-SEGC..CSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TT CS
SpoU_methylase 85 gksls..eidlkekvalvfGnEdkGlsnelleladrlvkIpmsge 127
+ks++ e++++ek +l++GnE +G++ +l++++d +v+Ip++g
tr|G1K946|G1K946_ANOCA 1509 AKSCDltEYSFPEKSLLLLGNEHEGIPANLIQQLDTCVEIPQQGV 1553
6655554***********************************985 PP
>> tr|H9G369|H9G369_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=spout1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 6.9e-05 0.25 16 41 .. 43 68 .. 42 102 .. 0.87
2 ? 1.4 0.0 0.089 3.3e+02 75 102 .. 227 257 .. 208 269 .. 0.83
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 6.9e-05
HHHHHHHHHTT-SEEEEESGSSCTCG CS
SpoU_methylase 16 GaiaRtakafgaselvlvkprsadll 41
G iaR++++f ++e+v+ ++r++d
tr|H9G369|H9G369_ANOCA 43 GQIARSCAVFSVDEVVVFDERGEDAK 68
99*****************9998654 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.089
TEEE.EEESTT-SEGCCSHHH..TTEEEEEE CS
SpoU_methylase 75 gfal.vatslkgkslseidlk..ekvalvfG 102
g++l v+ts++g+++++++l+ +++++vfG
tr|H9G369|H9G369_ANOCA 227 GYDLsVGTSERGTPVDQATLPafRHALIVFG 257
5666589999******999999999*****9 PP
>> tr|H9G6C2|H9G6C2_ANOCA Short chain dehydrogenase/reductase family 42E, member 1 OS=Anolis carolinensis OX=28377 GN=S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.0 2.4e-05 0.088 17 87 .. 81 148 .. 71 162 .. 0.83
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 2.4e-05
HHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SE CS
SpoU_methylase 17 aiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgks 87
+++R+a+a+g+++lv++++ ++ ++ +++r + +++ +l+l+ +++ + k+l e a++++++ g++
tr|H9G6C2|H9G6C2_ANOCA 81 NVLRAARAAGVRRLVYTSTYNV-VFGGQVVRGGDESWPYLPLRLHPDHYSRTKALAEM--AVLGADGAGRE 148
79****************9998.**********************9999888887765..99999884443 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 18528 (9796552 residues searched)
Passed MSV filter: 391 (0.0211032); expected 370.6 (0.02)
Passed bias filter: 359 (0.0193761); expected 370.6 (0.02)
Passed Vit filter: 30 (0.00161917); expected 18.5 (0.001)
Passed Fwd filter: 5 (0.000269862); expected 0.2 (1e-05)
Initial search space (Z): 18528 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.05
# Mc/sec: 27822.21
//
[ok]