# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-31 108.0 0.0 1.2e-30 106.7 0.0 1.7 1 tr|F7FTF7|F7FTF7_MONDO TAR (HIV-1) RNA binding protein 1 OS=
2e-27 96.3 0.0 2.9e-27 95.8 0.0 1.2 1 tr|F7DZ27|F7DZ27_MONDO Mitochondrial rRNA methyltransferase
3.4e-21 76.1 0.0 1.1e-12 48.6 0.0 2.2 2 tr|F6TUK5|F6TUK5_MONDO Mitochondrial rRNA methyltransferase
------ inclusion threshold ------
0.016 15.6 0.0 0.021 15.2 0.0 1.1 1 tr|F6WPS6|F6WPS6_MONDO Uncharacterized protein OS=Monodelphi
Domain annotation for each sequence (and alignments):
>> tr|F7FTF7|F7FTF7_MONDO TAR (HIV-1) RNA binding protein 1 OS=Monodelphis domestica OX=13616 GN=TARBP1 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.7 0.0 2.3e-34 1.2e-30 2 141 .. 1490 1631 .. 1489 1632 .. 0.93
Alignments for each domain:
== domain 1 score: 106.7 bits; conditional E-value: 2.3e-34
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEES..SHHHHHHHHCCCTEEEEEEST. CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvd..sleealkelkeegfalvatsl. 83
livv i++p+NlG ++Rt+++fgas+lv+ + ++ +++++++++++a+++l+l++v+ +l ++l++ k eg++++++++
tr|F7FTF7|F7FTF7_MONDO 1490 LIVVASLIDKPTNLGGLCRTCEIFGASALVVGSLHCI--NDKQFQHLSVSAEQWLPLVEVKplQLVDYLQKKKTEGYTTIGVEQt 1572
799****************************998885..9****************99996336789***************997 PP
.T-SEGCCSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
SpoU_methylase 84 .kgkslseidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
k+++l+e+ ++ek +l++GnE++G++ +l++++d +v+Ip++g ++SLNv+v+ a+l+
tr|F7FTF7|F7FTF7_MONDO 1573 aKSSDLTEYCFPEKSLLLLGNEREGIPANLIQHLDVCVEIPQHGIIRSLNVHVSGALLI 1631
7777899************************************************9987 PP
>> tr|F7DZ27|F7DZ27_MONDO Mitochondrial rRNA methyltransferase 1 OS=Monodelphis domestica OX=13616 GN=MRM1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.8 0.0 5.4e-31 2.9e-27 3 142 .] 218 372 .. 216 372 .. 0.86
Alignments for each domain:
== domain 1 score: 95.8 bits; conditional E-value: 5.4e-31
EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEG CS
SpoU_methylase 3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgksl 88
++l+ei+dp+NlGa++R+a +g+++++ ++++s +l+p + +a+ag+ ev+++ d+l +lk ++g+ + +t + g+ +
tr|F7DZ27|F7DZ27_MONDO 218 WLILEEIQDPRNLGAVLRSAHFLGVDKVITSRRNSC-PLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLVAGTVGcPGSVV 303
689***************************987776.***********************************9***99999866644 PP
C...CS........HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE-....---TTSSS--HHHHHHHHHH CS
SpoU_methylase 89 s...ei........dlkekvalvfGnEdkGlsnelleladrlvkI....pmsgeveSLNvavAvailly 142
+i ++++++lv+GnE++Gls+e+++l++ l++I +eveSLNv+vA++ill+
tr|F7DZ27|F7DZ27_MONDO 304 PqcsDIpitsclefLWDRSTLLVLGNEGSGLSHEIRNLCHILLTIlpgrELPPEVESLNVSVAAGILLH 372
43444433333333666***********************9999864444689*************985 PP
>> tr|F6TUK5|F6TUK5_MONDO Mitochondrial rRNA methyltransferase 3 OS=Monodelphis domestica OX=13616 GN=MRM3 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.6 0.0 2e-16 1.1e-12 2 66 .. 227 290 .. 226 320 .. 0.88
2 ! 25.6 0.0 2.5e-09 1.3e-05 88 142 .] 362 421 .. 334 421 .. 0.86
Alignments for each domain:
== domain 1 score: 48.6 bits; conditional E-value: 2e-16
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHH CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdslee 66
l +++++++dpgNlG+i+R+a+ +g+++++l+k ++d ++p+++ra++ga++++++ ++e
tr|F6TUK5|F6TUK5_MONDO 227 LLLICDNLRDPGNLGTILRSAAGAGCQKVLLTK-GCVDAWEPKVLRAGMGAHFQVPIISNLEWET 290
6799***************************88.**********************766655555 PP
== domain 2 score: 25.6 bits; conditional E-value: 2.5e-09
GCCSHHH.TTEEEEEEBTTTBS-HHHHCTSS....EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 88 lseidlk.ekvalvfGnEdkGlsnellelad....rlvkIpmsgeveSLNvavAvailly 142
++++++ ++a+v+G E++G+s e l la+ + + Ip+ + v+SLN a+A++ill+
tr|F6TUK5|F6TUK5_MONDO 362 PYDAAWTdAPAAVVIGGETHGVSLESLHLAEstggKRLLIPVVPGVDSLNSAMAASILLF 421
3455555699*****************999855556899******************985 PP
>> tr|F6WPS6|F6WPS6_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=POLE3 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.2 0.0 4e-06 0.021 8 89 .. 22 102 .. 16 118 .. 0.85
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 4e-06
S-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEGC CS
SpoU_methylase 8 eiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksls 89
+ d N+++ aR+a as vl ++ +a+ + + kr +++a +vl + + ++++++++ lke+ ++ + +++kgk+
tr|F6WPS6|F6WPS6_MONDO 22 ALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNAGDVLSAMEEMEFQRFISPLKEA-LDAYRREQKGKKEA 102
55667799999****9999999*********************************************.******99665433 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 418 (0.0196502); expected 425.4 (0.02)
Passed bias filter: 383 (0.0180049); expected 425.4 (0.02)
Passed Vit filter: 32 (0.00150432); expected 21.3 (0.001)
Passed Fwd filter: 4 (0.000188041); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.07
# Mc/sec: 22854.39
//
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