# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-21 74.7 0.0 4.6e-14 52.4 0.0 2.3 2 tr|S4R976|S4R976_PETMA Uncharacterized protein OS=Petromyzon
6.3e-16 58.4 0.0 9.6e-16 57.8 0.0 1.3 1 tr|S4R5Q8|S4R5Q8_PETMA Mitochondrial rRNA methyltransferase
Domain annotation for each sequence (and alignments):
>> tr|S4R976|S4R976_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.4 0.0 6.8e-18 4.6e-14 2 65 .. 122 184 .. 121 219 .. 0.88
2 ! 20.2 0.0 5.7e-08 0.00038 94 142 .] 274 326 .. 222 326 .. 0.78
Alignments for each domain:
== domain 1 score: 52.4 bits; conditional E-value: 6.8e-18
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHH CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsle 65
+ +v+++++dpgN+G+i+R+a+a+g+s+++l+k ++d+++p+++ra+aga++ ++l ++
tr|S4R976|S4R976_PETMA 122 ISLVCDNVRDPGNMGTIIRSAAAVGCSKVLLIK-GCVDVWEPKVLRAGAGAHFRVPLLPCLRWK 184
679*****************************9.********************9976555554 PP
== domain 2 score: 20.2 bits; conditional E-value: 5.7e-08
HTTEEEEEEBTTTBS-HHHHCTSS....EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 94 kekvalvfGnEdkGlsnellelad....rlvkIpmsgeveSLNvavAvailly 142
++++alv+ E +Gl e+l+la+ r +++ m+ veSLNv vA+++ll+
tr|S4R976|S4R976_PETMA 274 ARETALVVSGEAQGLGVEALRLAEgtggRRLHVGMAAGVESLNVGVAASVLLF 326
3899*******************9666679********************985 PP
>> tr|S4R5Q8|S4R5Q8_PETMA Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) OS=Petromyzon marinus OX=7757
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.8 0.0 1.4e-19 9.6e-16 2 102 .. 110 219 .] 109 219 .] 0.88
Alignments for each domain:
== domain 1 score: 57.8 bits; conditional E-value: 1.4e-19
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEG CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksl 88
l vv+ e++dp+NlGa++R+ + +g+++++++k++s l+p++ +a+ag+ ev+++++ + l ++l+e ++g+++v+t +++ks+
tr|S4R5Q8|S4R5Q8_PETMA 110 LWVVINEVNDPMNLGAVLRSTYFMGVETVLITKQNSSCSLTPTVSKASAGTVEVMDIYTTGRLPQVLQEKAKQGWQIVGTVGYAKST 196
579*******************************99999*****************************************9977755 PP
C.........CSHHHTTEEEEEE CS
SpoU_methylase 89 s.........eidlkekvalvfG 102
+++lk +++l++G
tr|S4R5Q8|S4R5Q8_PETMA 197 GsavpvvpcdQYQLKAPTILLIG 219
43233334445588899999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 13539 (5048892 residues searched)
Passed MSV filter: 235 (0.0173573); expected 270.8 (0.02)
Passed bias filter: 217 (0.0160278); expected 270.8 (0.02)
Passed Vit filter: 9 (0.000664746); expected 13.5 (0.001)
Passed Fwd filter: 2 (0.000147721); expected 0.1 (1e-05)
Initial search space (Z): 13539 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04
# Mc/sec: 17923.57
//
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