# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-41 137.8 0.0 1.1e-40 137.4 0.0 1.2 1 sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltran
3.2e-34 116.5 0.0 4.9e-34 115.9 0.0 1.3 1 tr|Q9HXI5|Q9HXI5_PSEAE tRNA (cytidine/uridine-2'-O-)-methylt
4.5e-32 109.5 0.0 5.1e-32 109.4 0.0 1.0 1 tr|Q9HU57|Q9HU57_PSEAE tRNA (cytidine(34)-2'-O)-methyltransf
------ inclusion threshold ------
0.042 12.4 0.2 0.049 12.1 0.2 1.2 1 tr|Q9HZU6|Q9HZU6_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas aeruginosa (strain ATCC 15692
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.4 0.0 7.9e-44 1.1e-40 2 142 .] 98 238 .. 97 238 .. 0.97
Alignments for each domain:
== domain 1 score: 137.4 bits; conditional E-value: 7.9e-44
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGC CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgksls 89
l ++l++++dp+NlGa++Rta+a+g++++++ k++sa +ln +++++a+ga+ev++l+ v++l+++l++l+++g+++v+t + +k+l+
sp|Q9HUM8|RLMB_PSEAE 98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSA-TLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGeADKTLY 185
6799***************************998887.9*******************************************8999999 PP
CSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 90 eidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
++dlk++++lv+G E+kG+++ ++e++d l ++pm+g+v+SLNv+vA++++l+
sp|Q9HUM8|RLMB_PSEAE 186 QLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238
**************************************************985 PP
>> tr|Q9HXI5|Q9HXI5_PSEAE tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ OS=Pseudomonas aeruginosa (strain ATCC 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.9 0.0 3.5e-37 4.9e-34 2 142 .] 5 155 .. 4 155 .. 0.87
Alignments for each domain:
== domain 1 score: 115.9 bits; conditional E-value: 3.5e-37
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SE CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgks 87
++vvlv++++pgN+G +aR++k++g+s+lvlv+p+s+ + +a++ a+ga ++l+ ++vvd+leeal + + ++ts+++++
tr|Q9HXI5|Q9HXI5_PSEAE 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESF--PHGDAVARASGATDILDaARVVDTLEEALIGCSVV----LGTSARDRR 85
79**********************************9..6666777779*******9999***********998....999998887 PP
GC....CS...........HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 88 ls....ei...........dlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
+ + + +++valvfG+E +Gl+ne+l++++ +v+Ip ++e+ SLN+a Av++l y
tr|Q9HXI5|Q9HXI5_PSEAE 86 IPwpllDPrecattclehlEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTY 155
7765552244444444444555*********************************************987 PP
>> tr|Q9HU57|Q9HU57_PSEAE tRNA (cytidine(34)-2'-O)-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.4 0.0 3.6e-35 5.1e-32 2 142 .] 2 142 .. 1 142 [. 0.95
Alignments for each domain:
== domain 1 score: 109.4 bits; conditional E-value: 3.6e-35
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SE CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgks 87
++v+l+++e+p N+G+i+R+++++g+ l+l++p +++l++++++ra+++++e+ +++++ l+++l++l + +l+a+++ +++
tr|Q9HU57|Q9HU57_PSEAE 2 FHVILFQPEIPPNTGNIIRLCANAGC-SLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPYLQSCLEALGQP--RLFAFTTkGSRA 85
78************************.9*******************************************99..888888857888 PP
GCCSHHHTTEEEEEEBTTTBS-HHHHCTSS..EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 88 lseidlkekvalvfGnEdkGlsnellelad..rlvkIpmsgeveSLNvavAvailly 142
++e+++++ a++fG+E++Gl++++++++ r +++pm++ +SLN++++va+ +y
tr|Q9HU57|Q9HU57_PSEAE 86 FHEVAYQRGDAFLFGPESRGLPEDVRNALPtdRRLRLPMREGCRSLNLSNTVAVTVY 142
89************************9975559*********************987 PP
>> tr|Q9HZU6|Q9HZU6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.2 3.5e-05 0.049 19 91 .. 3 74 .. 1 95 [. 0.75
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 3.5e-05
HHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEGCCS CS
SpoU_methylase 19 aRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgkslsei 91
+R + a+g+ +l l++ s+d+ e +r++ +ale+ +++ +++ + lk +++ +a + ++s++++
tr|Q9HZU6|Q9HZU6_PSEAE 3 IRWMMAAGLAALTLSGCASNDPAPLEQMRLTEQALEQAKAVGATDDVAELKLAQDK-YAAAQIAMTAESYKKA 74
8**************************************55544444446666666.5555554466666655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 126 (0.0226496); expected 111.3 (0.02)
Passed bias filter: 107 (0.0192342); expected 111.3 (0.02)
Passed Vit filter: 12 (0.00215711); expected 5.6 (0.001)
Passed Fwd filter: 4 (0.000719036); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.01
# Mc/sec: 26371.84
//
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