# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/SpoU_methylase.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SpoU_methylase [M=142]
Accession: PF00588.18
Description: SpoU rRNA Methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-33 115.9 0.0 1.4e-33 115.4 0.0 1.2 1 tr|B3SFM8|B3SFM8_TRIAD Peptidylprolyl isomerase (Fragment) O
5.1e-32 110.4 0.1 6.8e-32 110.0 0.1 1.2 1 tr|B3S0S7|B3S0S7_TRIAD Uncharacterized protein OS=Trichoplax
8.4e-30 103.2 0.0 1.3e-29 102.6 0.0 1.3 1 tr|B3RWG3|B3RWG3_TRIAD Uncharacterized protein OS=Trichoplax
1.8e-29 102.1 0.0 2.2e-29 101.9 0.0 1.1 1 tr|B3SDD6|B3SDD6_TRIAD Uncharacterized protein (Fragment) OS
4.4e-24 84.7 0.0 2.2e-23 82.4 0.0 2.0 1 tr|B3S684|B3S684_TRIAD Uncharacterized protein OS=Trichoplax
------ inclusion threshold ------
0.022 14.3 1.7 0.42 10.1 0.1 2.9 2 tr|B3RI69|B3RI69_TRIAD Uncharacterized protein OS=Trichoplax
0.032 13.8 0.0 3.2 7.3 0.0 2.6 2 tr|B3RPB5|B3RPB5_TRIAD Uncharacterized protein OS=Trichoplax
Domain annotation for each sequence (and alignments):
>> tr|B3SFM8|B3SFM8_TRIAD Peptidylprolyl isomerase (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_63015 PE=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.4 0.0 8.6e-37 1.4e-33 2 142 .] 136 273 .. 135 273 .. 0.95
Alignments for each domain:
== domain 1 score: 115.4 bits; conditional E-value: 8.6e-37
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEG CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksl 88
+ +vl+++++p+N+G+i+Rt++++ga el+lvkp +++l ++++kra++++++ +++ vvdslee+l+e ++ + +s+k++++
tr|B3SFM8|B3SFM8_TRIAD 136 MKIVLYNPQIPQNTGNIIRTCSVTGA-ELILVKPLGFELSDRKLKRAGLDYWDEVKISVVDSLEEILEENDDF----CFFSSKATQW 217
679***********************.******************************************7776....7888899999 PP
C.CSHHHTTEEEEEEBTTTBS-HHHHCTSS.EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 89 s.eidlkekvalvfGnEdkGlsnellelad.rlvkIpmsgeveSLNvavAvailly 142
+ + +++++ +l+fG+E++Gl+ e++++++ +l+kIpm ++++LN+++Av+i +y
tr|B3SFM8|B3SFM8_TRIAD 218 HtDRTYSKNSILIFGSETSGLPIEVMRKYQeKLIKIPMLAKQRCLNLSNAVSIGIY 273
8799*************************988*********************988 PP
>> tr|B3S0S7|B3S0S7_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_37807 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.0 0.1 4.1e-35 6.8e-32 4 142 .] 109 258 .. 106 258 .. 0.86
Alignments for each domain:
== domain 1 score: 110.0 bits; conditional E-value: 4.1e-35
EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEG CS
SpoU_methylase 4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgksl 88
+ l +++dp+NlGa++Rta+ +g++++v+ + r+ + l+ + +a+aga ev +++ v++l+++l+ l e+++++++t + + +++
tr|B3S0S7|B3S0S7_TRIAD 109 LGLNDVQDPMNLGALIRTAALMGVNRVVVNS-RKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNIIGTVGhkEVNQY 194
56899*******************9999966.55569*****************************************885222344 PP
CCSHHH......TTEEEEEEBTTTBS-HHHHCTSSEEEE----....TTSSS--HHHHHHHHHH CS
SpoU_methylase 89 seidlk......ekvalvfGnEdkGlsnelleladrlvkIpms....geveSLNvavAvailly 142
+ ++ + ++++l++GnE+ G+s ++ e+++ +++Ip+s ++++SLNv+vA++illy
tr|B3S0S7|B3S0S7_TRIAD 195 QAMSCQnfnhngKPTILMLGNEGFGISASIKEKCNSFLTIPTSsscpPDIDSLNVSVAAGILLY 258
444333556889******************************63333689************98 PP
>> tr|B3RWG3|B3RWG3_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_56739 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.6 0.0 7.6e-33 1.3e-29 2 142 .] 69 209 .. 68 209 .. 0.93
Alignments for each domain:
== domain 1 score: 102.6 bits; conditional E-value: 7.6e-33
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-S CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgk 86
+ vvl++i+++gN ai Rt++a+g+++ + + ++ r+ aga ++++++ ++s+ee++++lk g++++ats+ k+k
tr|B3RWG3|B3RWG3_TRIAD 69 IAVVLEGITNEGNEQAIYRTMDALGFQTAHRIPSPL--YRLKTCGRTDAGAMKWIDIESWKSTEECISQLKSCGYKILATSSenKTK 153
689***********************9988876322..456789************************************9987777 PP
EGCCSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 87 slseidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
+l+ +d+++k+a+v+G+E++G+s+e+++l+d++ +I m g veS Nv+vA+ai+ly
tr|B3RWG3|B3RWG3_TRIAD 154 TLDSFDFSNKTAVVLGSEQEGISKEAMNLVDNVFRISMVGFVESYNVSVAAAIILY 209
88899**************************************************9 PP
>> tr|B3SDD6|B3SDD6_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_5097 PE=4 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.9 0.0 1.3e-32 2.2e-29 2 141 .. 38 180 .. 37 181 .. 0.92
Alignments for each domain:
== domain 1 score: 101.9 bits; conditional E-value: 1.3e-32
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH...EEEESSHHHHHHHHCCCTEEEEEEST.. CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle...lkvvdsleealkelkeegfalvatsl.. 83
livv i+++ NlG ++Rt++++g+s+lv+++ +++ + n+e++ +++ a+++++ +++v++lee+l +k+ g+ +v++++
tr|B3SDD6|B3SDD6_TRIAD 38 LIVVASLIDKAANLGGLCRTCEILGVSRLVISN-KNF-IENREFQSLSVTAHKWIPideVVRVEELEEYLISMKQLGYSVVGVEQta 122
78999**************************88.666.79999****99999999843556779*******************9976 PP
T-SEGCCSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
SpoU_methylase 84 kgkslseidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
++ +l+++d++++ +l++GnE++G++ ll+ +d++v Ip+ g ++S+Nv+v+ a+l+
tr|B3SDD6|B3SDD6_TRIAD 123 NSADLTKYDFAKRSILLLGNEREGIPVPLLKMVDECVAIPQLGTIRSFNVHVTGAVLI 180
777888**************************************************97 PP
>> tr|B3S684|B3S684_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_59713 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.4 0.0 1.4e-26 2.2e-23 2 142 .] 144 312 .. 143 312 .. 0.72
Alignments for each domain:
== domain 1 score: 82.4 bits; conditional E-value: 1.4e-26
EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHH..HHHHHCCCTEEEEEESTT-S CS
SpoU_methylase 2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdslee..alkelkeegfalvatslkgk 86
+++++++++dpgNlG+i+R+a+a+++s ++l++ +ad+++p+++r+a+g++++l++++ ++ + + k+lk +f l + +++
tr|B3S684|B3S684_TRIAD 144 VTLICDNVRDPGNLGNIIRSAAAANCSSVILTH-GCADPWQPKVMRSASGSQFQLPIYYDITWGQisCSKALKSMNFYLAECMRDQY 229
7899***************************87.**********************8777666652234445555555544444333 PP
EGC.CS..................HHH..TTEEEEEEBTTTBS-HH....HHCTSS..EEEE----TTSSS--HHHHHHHHHH CS
SpoU_methylase 87 sls.ei..................dlk..ekvalvfGnEdkGlsne....llelad..rlvkIpmsgeveSLNvavAvailly 142
++ ++ d++ + ++l +GnE +G + + + e +d + ++Ip +++SLNva+A++i+l+
tr|B3S684|B3S684_TRIAD 230 QYLqNTrstshisnekklvpyydiDWThkSGALLAIGNEAHGFKLNttasVTECCDitQRITIPLCHRIQSLNVATAASIILF 312
33321122233343344444444433366999**********8755111155667776799*******************985 PP
>> tr|B3RI69|B3RI69_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52370 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.2 0.079 1.3e+02 39 79 .. 406 446 .. 395 458 .. 0.79
2 ? 10.1 0.1 0.00026 0.42 28 96 .. 457 526 .. 452 531 .. 0.91
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.079
TCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEE CS
SpoU_methylase 39 dllnpeakraaagalevlelkvvdsleealkelkeegfalv 79
++ ++++++ a+++++lel++ +++ +++++lk +++ l
tr|B3RI69|B3RI69_TRIAD 406 KVQKTHVAQQQAQNRKQLELAKRENFLQLIDDLKTKDVLLQ 446
456777888899999*******************9976554 PP
== domain 2 score: 10.1 bits; conditional E-value: 0.00026
SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SEGCCSHHHTT CS
SpoU_methylase 28 selvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgkslseidlkek 96
+e+ +v+ ++ + + k++a++ +l+ +++vd+l+ ++e++e+++ l+ s+++++l++i+lk +
tr|B3RI69|B3RI69_TRIAD 457 KEVAVVEAKGRKAVEHLQKKIAHERSLKLNaFHKVDDLQVQINEFEEKQYSLLNSSGRAQPLKDIKLKTR 526
5788899999999999999******999999*********************************998865 PP
>> tr|B3RPB5|B3RPB5_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53475 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.3 0.0 0.0019 3.2 16 46 .. 93 122 .. 92 149 .. 0.72
2 ? 3.6 0.0 0.027 45 44 102 .. 245 307 .. 232 318 .. 0.81
Alignments for each domain:
== domain 1 score: 7.3 bits; conditional E-value: 0.0019
HHHHHHHHHTT-SEEEEESGSSCTCGSHHHH CS
SpoU_methylase 16 GaiaRtakafgaselvlvkprsadllnpeak 46
G iaR+ +f+++e+v+ ++ ++ + n+++
tr|B3RPB5|B3RPB5_TRIAD 93 GQIARALVIFEVDEVVIFDESGK-TVNEDVG 122
99***************997776.5555554 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.027
HHHHHCTTHHHHHHEEEESSHHHHHHHHCCC.TEEE.EEESTT-SEGCCSHHH..TTEEEEEE CS
SpoU_methylase 44 eakraaagalevlelkvvdsleealkelkee.gfal.vatslkgkslseidlk..ekvalvfG 102
+a r+ ag +++v+ sl +a++e+ e g++l ++ts +g+s++e++l+ +++++ fG
tr|B3RPB5|B3RPB5_TRIAD 245 DAPRMDAGIYWGYRVRVARSLGAAITECPYEgGYDLsIGTSDGGDSMEELNLSsfKHILIAFG 307
5556666666666789999**********9955999899999******887776699999999 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (142 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 270 (0.0234416); expected 230.4 (0.02)
Passed bias filter: 222 (0.0192742); expected 230.4 (0.02)
Passed Vit filter: 15 (0.00130231); expected 11.5 (0.001)
Passed Fwd filter: 7 (0.000607744); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.04
# Mc/sec: 18538.37
//
[ok]