# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TRM.hmm.txt
# target sequence database:        proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TRM  [M=376]
Accession:   PF02005.15
Description: N2,N2-dimethylguanosine tRNA methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
   4.3e-128  427.6   0.0   5.5e-128  427.2   0.0    1.1  1  tr|F6SZY0|F6SZY0_CIOIN  tRNA (guanine(26)-N(2))-dimethyltrans


Domain annotation for each sequence (and alignments):
>> tr|F6SZY0|F6SZY0_CIOIN  tRNA (guanine(26)-N(2))-dimethyltransferase OS=Ciona intestinalis OX=7719 PE=3 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.2   0.0  3.3e-132  5.5e-128       7     376 .]      19     455 ..      13     455 .. 0.92

  Alignments for each domain:
  == domain 1  score: 427.2 bits;  conditional E-value: 3.3e-132
                             E----.SS--TT--SS--GGGHHHHHHHHHH....HHHHHHHH-S-......................................... CS
                     TRM   7 vedke.vtvskkeeVFYNPvqefnRDlsvlvir.qlellkkklgek......................................... 50 
                             +e+k+ +++++++ VFYNPvqefnRD+++++i  +++ + kk   +                                         
  tr|F6SZY0|F6SZY0_CIOIN  19 TEGKAsIIFPSANSVFYNPVQEFNRDITIAAITeFIKEKLKK---Nkingeikssskcltsavefgredaasvislnedeteekiyp 102
                             44444488***********************86554444333...234477************************************ PP

                             .......EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC...--SS-EEEEEE- CS
                     TRM  51 .......ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvlla...ekkkrfdviDlD 127
                                    +++l+aLsa+GlR++Rfa+E+pgvk+++aND+s+ A +li++N+k nev ++v++n +dA+++++    k k+fdviD+D
  tr|F6SZY0|F6SZY0_CIOIN 103 gekyeegVTILEALSATGLRSVRFAKELPGVKRIVANDLSHDAFQLIERNIKHNEVGHLVEANLGDATTFMYsnrGKLKEFDVIDID 189
                             ************************************************************************77667799******* PP

                             -SS--GGGHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETT CS
                     TRM 128 PfGspapfldsavqsvkekglLlvTaTDtavLaGaspekclrkYgavalkselcHEvalRillkavareaakYekavepllslsadf 214
                             P+Gs+a fld+avq+vk +glL+vT+TD+av+aG+ p +c +kY++v+lks++cHE+alRi+l+++ ++aa+Y+++++pllsls+df
  tr|F6SZY0|F6SZY0_CIOIN 190 PYGSAACFLDAAVQAVKPGGLLCVTCTDMAVMAGNFPGTCWAKYQSVPLKSKACHEQALRIVLGSISSHAARYSRYIVPLLSLSVDF 276
                             *************************************************************************************** PP

                             EEEEEEEEEE-HHHHHHHHTTEEEEEEETTT..........--EEEE--GGG--..............SB-TTT-SBEEEEEEEE-S CS
                     TRM 215 YvrvfvkvktgaakvkkvleklglvlhCsgC..........lseekvkglakfk..............aecehcgaklhlaGPlwlg 277
                             Yvr+f++v+ ++  +++  +k+  ++ C+gC          +        + ++              ++c +c+++++++GP w +
  tr|F6SZY0|F6SZY0_CIOIN 277 YVRIFMQVHYKPSIAQQASSKQIKIYRCVGCgslhqqnivdV--------KGTEknptyfasvgppvdERCVECNHRFKIGGPYWGA 355
                             *******************************77443333221........22224556777789***9******************* PP

                             -S--HHHHHHHHHHHCT..-TTS..-HHHHHHHHHHHHHHS--SS-EEHHHHHHHHT-SS---HHHHHHH....TT-EE-TTSTTEE CS
                     TRM 278 plkdkefveevleeaekekeeel..kkrvkklLklikeElldaplyydlsqlasvlklsvpplkkvvsalkelgfevsrtHakpkai 362
                              ++d++fv ++l  +++  ++++  ++r+ ++L+++ eEl+d+p+yy +++l+ +l++ +p+ k ++sa+++ g++vs  H + ++i
  tr|F6SZY0|F6SZY0_CIOIN 356 AMHDQDFVRRILTSVKN-FPKRFgtSERIIGMLTMVAEELPDVPFYYITDELSMTLRCGSPSAKLIRSAILNSGYRVSSFHGRVNSI 441
                             ****************9.7888888************************************************************** PP

                             E-SS-HHHHHHHHH CS
                     TRM 363 kTnapleavvevlr 376
                             kT+ap  ++++v+r
  tr|F6SZY0|F6SZY0_CIOIN 442 KTDAPSTFIWDVMR 455
                             *************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (376 nodes)
Target sequences:                        16678  (5370518 residues searched)
Passed MSV filter:                       572  (0.0342967); expected 333.6 (0.02)
Passed bias filter:                      336  (0.0201463); expected 333.6 (0.02)
Passed Vit filter:                        22  (0.0013191); expected 16.7 (0.001)
Passed Fwd filter:                         1  (5.99592e-05); expected 0.2 (1e-05)
Initial search space (Z):              16678  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.05
# Mc/sec: 40386.30
//
[ok]