# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM [M=376]
Accession: PF02005.15
Description: N2,N2-dimethylguanosine tRNA methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-117 389.3 0.0 1.2e-116 389.1 0.0 1.0 1 tr|A9VDF1|A9VDF1_MONBE tRNA (guanine(26)-N(2))-dimethyltrans
0.00021 19.6 0.0 0.00032 19.0 0.0 1.3 1 tr|A9UWK9|A9UWK9_MONBE Predicted protein (Fragment) OS=Monos
0.0081 14.4 0.0 0.012 13.9 0.0 1.2 1 tr|A9V7D5|A9V7D5_MONBE Predicted protein OS=Monosiga brevico
------ inclusion threshold ------
0.042 12.1 0.0 0.052 11.7 0.0 1.1 1 tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS
Domain annotation for each sequence (and alignments):
>> tr|A9VDF1|A9VDF1_MONBE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Monosiga brevicollis OX=81824 GN=34698 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 389.1 0.0 5.1e-120 1.2e-116 6 376 .] 14 458 .. 9 458 .. 0.92
Alignments for each domain:
== domain 1 score: 389.1 bits; conditional E-value: 5.1e-120
EE----SS--TT--SS--GGGHHHHHHHHHH....HHHHHHHH-S-......................................... CS
TRM 6 kvedkevtvskkeeVFYNPvqefnRDlsvlvir.qlellkkklgek......................................... 50
+ ++++ ++++e VFYNPvqefnRDls vi + + + ++ +
tr|A9VDF1|A9VDF1_MONBE 14 VEGKAAILFPEDEGVFYNPVQEFNRDLSTCVILnFANRFMPDTSDPwgkkharrtshalgdplfegshrkeaeeqikaqspavestp 100
34444588********************9998546666666655557777************************************* PP
.....................EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--G.GEEEE-S-HHHHHC CS
TRM 51 .....................ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklnevee.ivvineddAnvlla 115
i++l+aL+asGlR+iR+ E+p ++++ ND+s+ Ave i++N +n+++e + +n +dAnv+++
tr|A9VDF1|A9VDF1_MONBE 101 apgertmynpsdasfdretqgIRILEALAASGLRSIRYYREIPAIRSIVCNDFSQAAVENIRRNLAYNDIAEsGIIPNFGDANVVMH 187
***********************************************************************8789************ PP
....--SS-EEEEEE--SS--GGGHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHHHHHHHHHHHHHHH CS
TRM 116 ....ekkkrfdviDlDPfGspapfldsavqsvkekglLlvTaTDtavLaGaspekclrkYgavalkselcHEvalRillkavareaa 198
+ rfdv+DlDP+G+++pfld+av+s+++ D+avLaGa+p++c++kYg+v+lk +cHE+++Rill+++ ++aa
tr|A9VDF1|A9VDF1_MONBE 188 dastRPGARFDVVDLDPYGTASPFLDAAVKSITD--------GDMAVLAGAHPDACYAKYGSVSLKGPFCHESGVRILLNSISTAAA 266
887667789*********************9877........7******************************************** PP
TTTEEEEEEEEEEETTEEEEEEEEEE-HHHHHHHHTTEEEEEEETTT..........--EEEE--GGG--........SB-TTT-SB CS
TRM 199 kYekavepllslsadfYvrvfvkvktgaakvkkvleklglvlhCsgC..........lseekvkglakfk........aecehcgak 267
+Y +++pl+s s+dfY rvfv+v +g+ak+k ++++ g+v+ C +C + +kf+ +c+hcg
tr|A9VDF1|A9VDF1_MONBE 267 RYGSYIQPLMSCSIDFYCRVFVRVFKGPAKAKLSAQHNGVVYMCPRChsfasasfgrF-----GDKNKFRhghapsvgDHCQHCGGP 348
***********************************************87766444330.....3333333555677779******** PP
EEEEEEEE-S-S--HHHHHHHHHHHCT..-TTS..-HHHHHHHHHHHHHHS--SS-EEHHHHHHHHT-SS---HHHHHHH....TT- CS
TRM 268 lhlaGPlwlgplkdkefveevleeaekekeeel..kkrvkklLklikeElldaplyydlsqlasvlklsvpplkkvvsalkelgfev 352
++++GPlwlgp++d +fv++ ++ +++ +++ + + r++++ +++keEl+dap+ y++s+la++ ++++ p ++++sal ++g++v
tr|A9VDF1|A9VDF1_MONBE 349 FQIGGPLWLGPMHDPDFVGQCADYLKA-HRDDFgtADRMEGMFAICKEELPDAPFHYNVSDLAHTAHCQSIPHDTFRSALVNAGYRV 434
**************************9.55555579*************************************************** PP
EE-TTSTTEEE-SS-HHHHHHHHH CS
TRM 353 srtHakpkaikTnapleavvevlr 376
s tH++p+++kT+ap ++++ lr
tr|A9VDF1|A9VDF1_MONBE 435 SPTHTNPQGMKTDAPSTFIWDLLR 458
*********************986 PP
>> tr|A9UWK9|A9UWK9_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=1458 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.0 0.0 1.4e-07 0.00032 69 114 .. 143 185 .. 98 195 .. 0.84
Alignments for each domain:
== domain 1 score: 19.0 bits; conditional E-value: 1.4e-07
HH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHH CS
TRM 69 lEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvll 114
+ + ++v+aND++++ ++ + +Nv ln v++ v++ ++d +++
tr|A9UWK9|A9UWK9_MONBE 143 K---NGRRVYANDLNPESYAALTQNVVLNRVHNHVQTYNMDGGAVV 185
3...4789*************************9*99999987776 PP
>> tr|A9V7D5|A9V7D5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=28161 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.0 5.2e-06 0.012 53 111 .. 240 297 .. 201 303 .. 0.88
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 5.2e-06
EEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HH CS
TRM 53 vldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAn 111
v+d +++ G ++ +++ + ++ a + +++Ave +++N kln+v+++ +++e+d +
tr|A9V7D5|A9V7D5_MONBE 240 VVDLFAGIGYFTLPYLVH-ARARFLHACEWNPHAVEALRRNLKLNQVADRCEVHEGDNR 297
677788888888888888.8889999999**************************9976 PP
>> tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=2498 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 2.3e-05 0.052 52 116 .. 46 110 .. 24 133 .. 0.84
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 2.3e-05
EEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC...- CS
TRM 52 kvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvlla...e 116
v+da+ + G ai al +vla D+ + +e ++N+++ ve+ + + ++dA +l+ +
tr|A9UR20|A9UR20_MONBE 46 MVIDAFCGPGANAIQMALA---GCQVLAIDLDPVKLEAARHNASIYGVEDQIDFVHGDAVSVLRqlaS 110
589**************98...6689999*************************9*******995541 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (376 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 229 (0.0249238); expected 183.8 (0.02)
Passed bias filter: 181 (0.0196996); expected 183.8 (0.02)
Passed Vit filter: 12 (0.00130605); expected 9.2 (0.001)
Passed Fwd filter: 4 (0.00043535); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07
# Mc/sec: 29607.12
//
[ok]