# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TRM.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TRM [M=376] Accession: PF02005.15 Description: N2,N2-dimethylguanosine tRNA methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-117 389.3 0.0 1.2e-116 389.1 0.0 1.0 1 tr|A9VDF1|A9VDF1_MONBE tRNA (guanine(26)-N(2))-dimethyltrans 0.00021 19.6 0.0 0.00032 19.0 0.0 1.3 1 tr|A9UWK9|A9UWK9_MONBE Predicted protein (Fragment) OS=Monos 0.0081 14.4 0.0 0.012 13.9 0.0 1.2 1 tr|A9V7D5|A9V7D5_MONBE Predicted protein OS=Monosiga brevico ------ inclusion threshold ------ 0.042 12.1 0.0 0.052 11.7 0.0 1.1 1 tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS Domain annotation for each sequence (and alignments): >> tr|A9VDF1|A9VDF1_MONBE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Monosiga brevicollis OX=81824 GN=34698 PE=3 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 389.1 0.0 5.1e-120 1.2e-116 6 376 .] 14 458 .. 9 458 .. 0.92 Alignments for each domain: == domain 1 score: 389.1 bits; conditional E-value: 5.1e-120 EE----SS--TT--SS--GGGHHHHHHHHHH....HHHHHHHH-S-......................................... CS TRM 6 kvedkevtvskkeeVFYNPvqefnRDlsvlvir.qlellkkklgek......................................... 50 + ++++ ++++e VFYNPvqefnRDls vi + + + ++ + tr|A9VDF1|A9VDF1_MONBE 14 VEGKAAILFPEDEGVFYNPVQEFNRDLSTCVILnFANRFMPDTSDPwgkkharrtshalgdplfegshrkeaeeqikaqspavestp 100 34444588********************9998546666666655557777************************************* PP .....................EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--G.GEEEE-S-HHHHHC CS TRM 51 .....................ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklnevee.ivvineddAnvlla 115 i++l+aL+asGlR+iR+ E+p ++++ ND+s+ Ave i++N +n+++e + +n +dAnv+++ tr|A9VDF1|A9VDF1_MONBE 101 apgertmynpsdasfdretqgIRILEALAASGLRSIRYYREIPAIRSIVCNDFSQAAVENIRRNLAYNDIAEsGIIPNFGDANVVMH 187 ***********************************************************************8789************ PP ....--SS-EEEEEE--SS--GGGHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHHHHHHHHHHHHHHH CS TRM 116 ....ekkkrfdviDlDPfGspapfldsavqsvkekglLlvTaTDtavLaGaspekclrkYgavalkselcHEvalRillkavareaa 198 + rfdv+DlDP+G+++pfld+av+s+++ D+avLaGa+p++c++kYg+v+lk +cHE+++Rill+++ ++aa tr|A9VDF1|A9VDF1_MONBE 188 dastRPGARFDVVDLDPYGTASPFLDAAVKSITD--------GDMAVLAGAHPDACYAKYGSVSLKGPFCHESGVRILLNSISTAAA 266 887667789*********************9877........7******************************************** PP TTTEEEEEEEEEEETTEEEEEEEEEE-HHHHHHHHTTEEEEEEETTT..........--EEEE--GGG--........SB-TTT-SB CS TRM 199 kYekavepllslsadfYvrvfvkvktgaakvkkvleklglvlhCsgC..........lseekvkglakfk........aecehcgak 267 +Y +++pl+s s+dfY rvfv+v +g+ak+k ++++ g+v+ C +C + +kf+ +c+hcg tr|A9VDF1|A9VDF1_MONBE 267 RYGSYIQPLMSCSIDFYCRVFVRVFKGPAKAKLSAQHNGVVYMCPRChsfasasfgrF-----GDKNKFRhghapsvgDHCQHCGGP 348 ***********************************************87766444330.....3333333555677779******** PP EEEEEEEE-S-S--HHHHHHHHHHHCT..-TTS..-HHHHHHHHHHHHHHS--SS-EEHHHHHHHHT-SS---HHHHHHH....TT- CS TRM 268 lhlaGPlwlgplkdkefveevleeaekekeeel..kkrvkklLklikeElldaplyydlsqlasvlklsvpplkkvvsalkelgfev 352 ++++GPlwlgp++d +fv++ ++ +++ +++ + + r++++ +++keEl+dap+ y++s+la++ ++++ p ++++sal ++g++v tr|A9VDF1|A9VDF1_MONBE 349 FQIGGPLWLGPMHDPDFVGQCADYLKA-HRDDFgtADRMEGMFAICKEELPDAPFHYNVSDLAHTAHCQSIPHDTFRSALVNAGYRV 434 **************************9.55555579*************************************************** PP EE-TTSTTEEE-SS-HHHHHHHHH CS TRM 353 srtHakpkaikTnapleavvevlr 376 s tH++p+++kT+ap ++++ lr tr|A9VDF1|A9VDF1_MONBE 435 SPTHTNPQGMKTDAPSTFIWDLLR 458 *********************986 PP >> tr|A9UWK9|A9UWK9_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=1458 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 1.4e-07 0.00032 69 114 .. 143 185 .. 98 195 .. 0.84 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.4e-07 HH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHH CS TRM 69 lEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvll 114 + + ++v+aND++++ ++ + +Nv ln v++ v++ ++d +++ tr|A9UWK9|A9UWK9_MONBE 143 K---NGRRVYANDLNPESYAALTQNVVLNRVHNHVQTYNMDGGAVV 185 3...4789*************************9*99999987776 PP >> tr|A9V7D5|A9V7D5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=28161 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.0 5.2e-06 0.012 53 111 .. 240 297 .. 201 303 .. 0.88 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 5.2e-06 EEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HH CS TRM 53 vldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAn 111 v+d +++ G ++ +++ + ++ a + +++Ave +++N kln+v+++ +++e+d + tr|A9V7D5|A9V7D5_MONBE 240 VVDLFAGIGYFTLPYLVH-ARARFLHACEWNPHAVEALRRNLKLNQVADRCEVHEGDNR 297 677788888888888888.8889999999**************************9976 PP >> tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=2498 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2.3e-05 0.052 52 116 .. 46 110 .. 24 133 .. 0.84 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.3e-05 EEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC...- CS TRM 52 kvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvlla...e 116 v+da+ + G ai al +vla D+ + +e ++N+++ ve+ + + ++dA +l+ + tr|A9UR20|A9UR20_MONBE 46 MVIDAFCGPGANAIQMALA---GCQVLAIDLDPVKLEAARHNASIYGVEDQIDFVHGDAVSVLRqlaS 110 589**************98...6689999*************************9*******995541 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (376 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 229 (0.0249238); expected 183.8 (0.02) Passed bias filter: 181 (0.0196996); expected 183.8 (0.02) Passed Vit filter: 12 (0.00130605); expected 9.2 (0.001) Passed Fwd filter: 4 (0.00043535); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07 # Mc/sec: 29607.12 // [ok]