# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TRM.hmm.txt
# target sequence database:        proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TRM  [M=376]
Accession:   PF02005.15
Description: N2,N2-dimethylguanosine tRNA methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
     0.0008   17.0   0.0      0.001   16.7   0.0    1.1  1  tr|Q9I6D9|Q9I6D9_PSEAE  Uncharacterized protein OS=Pseudomona


Domain annotation for each sequence (and alignments):
>> tr|Q9I6D9|Q9I6D9_PSEAE  Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.8e-07     0.001      52     128 ..     223     300 ..     133     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-07
                             EEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC...--SS-EEEEEE-- CS
                     TRM  52 kvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvlla...ekkkrfdviDlDP 128
                             +vld +s  G  +i  a    g++ev+  D+s  A++ +++N+ ln v+e v   e+d    l+   + ++rfdv+  DP
  tr|Q9I6D9|Q9I6D9_PSEAE 223 RVLDLFSYIGGWGIQAAAF--GASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRelkAADERFDVVIADP 300
                             6777777777777777766..899*************************999888888766666555999******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (376 nodes)
Target sequences:                         5563  (1857172 residues searched)
Passed MSV filter:                       113  (0.0203128); expected 111.3 (0.02)
Passed bias filter:                      107  (0.0192342); expected 111.3 (0.02)
Passed Vit filter:                        10  (0.00179759); expected 5.6 (0.001)
Passed Fwd filter:                         1  (0.000179759); expected 0.1 (1e-05)
Initial search space (Z):               5563  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 34914.83
//
[ok]