# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-33 115.6 0.0 8.3e-33 115.3 0.0 1.1 1 tr|A0A1X7TNM7|A0A1X7TNM7_AMPQE Uncharacterized protein OS=Amphi
1.3e-31 111.4 0.2 2.1e-29 104.1 0.2 2.0 1 tr|A0A1X7STS0|A0A1X7STS0_AMPQE Uncharacterized protein OS=Amphi
5.7e-29 102.7 1.6 1e-15 59.3 0.3 2.0 2 tr|A0A1X7SH15|A0A1X7SH15_AMPQE Uncharacterized protein OS=Amphi
7.4e-23 82.7 0.0 9.8e-23 82.3 0.0 1.1 1 tr|A0A1X7SJV1|A0A1X7SJV1_AMPQE Uncharacterized protein OS=Amphi
5.5e-22 79.8 0.0 8.5e-22 79.2 0.0 1.2 1 tr|A0A1X7TNY1|A0A1X7TNY1_AMPQE Uncharacterized protein OS=Amphi
2.4e-13 51.5 0.0 3.5e-13 51.0 0.0 1.3 1 tr|A0A1X7SSD4|A0A1X7SSD4_AMPQE Uncharacterized protein OS=Amphi
6.2e-05 23.9 1.3 0.0051 17.6 0.6 2.4 2 tr|A0A1X7VTI4|A0A1X7VTI4_AMPQE Uncharacterized protein OS=Amphi
0.0059 17.4 0.2 0.0069 17.2 0.2 1.1 1 tr|A0A1X7U111|A0A1X7U111_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7TNM7|A0A1X7TNM7_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.3 0.0 1.5e-36 8.3e-33 1 111 [. 85 193 .] 85 193 .] 0.98
Alignments for each domain:
== domain 1 score: 115.3 bits; conditional E-value: 1.5e-36
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlk 79
lqqss+ig+l++l+ll+++s ++EfGaG+g+ls++++ a ++d e ++Lidr+ + k+D +r d++ ++++Rl
tr|A0A1X7TNM7|A0A1X7TNM7_AMPQE 85 LQQSSIIGHLDSLGLLSSDSLFIEFGAGRGKLSHWIQLASNND--ELIDFLLIDRSNPKRKFDMYHRFDTQGPKFERLL 161
59**************************************888..99******************************** PP
TRM13 80 idIkdLnlsaleelekkkkvvavsKHLCGaAT 111
idI++L+l ++ +++k++vavsKHLCG AT
tr|A0A1X7TNM7|A0A1X7TNM7_AMPQE 162 IDIEHLDLGLYQNFKNHKHIVAVSKHLCGSAT 193
*************99****************9 PP
>> tr|A0A1X7STS0|A0A1X7STS0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.1 0.2 3.8e-33 2.1e-29 113 261 .. 1 133 [. 1 134 [. 0.92
Alignments for each domain:
== domain 1 score: 104.1 bits; conditional E-value: 3.8e-33
TRM13 113 LtLrcllnsekask.......kakleglliAlCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkseae 184
LtLrcl++ + +++ + l+g++iAlCCh++C+w++ + e+ +elg+++ +f+++t m+SWav+g+r
tr|A0A1X7STS0|A0A1X7STS0_AMPQE 1 LTLRCLTRYHLERStvtppiaTPPLSGIIIALCCHQRCQWDSIYGIELWKELGFNSIDFHLITLMSSWAVCGQR----- 74
8*******99988889****999***************************************************..... PP
TRM13 185 eedekeekekeekkeeeeseeekksklsseereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
s ++++++ + +e +Glk+k+li+ R++ l+++gf+++l +Yv++ +slEnvlL+a
tr|A0A1X7STS0|A0A1X7STS0_AMPQE 75 ------------------SADKDTKGYIPHAKEPMGLKCKELINLIRVHELRKNGFQTHLLYYVDRRTSLENVLLIA 133
..................11223344556789*******************************************97 PP
>> tr|A0A1X7SH15|A0A1X7SH15_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.3 0.3 1.9e-19 1e-15 129 183 .. 8 62 .. 4 69 .. 0.90
2 ! 43.8 0.0 9.7e-15 5.3e-11 213 261 .. 69 117 .. 59 118 .. 0.91
Alignments for each domain:
== domain 1 score: 59.3 bits; conditional E-value: 1.9e-19
TRM13 129 kleglliAlCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrksea 183
l+g++iAlCCh++C+w++ + e+ +elg+++ +f+++t m+SWav+g+r+ ++
tr|A0A1X7SH15|A0A1X7SH15_AMPQE 8 PLSGIIIALCCHQRCQWDSIYGIELWKELGFNSIDFHLITLMSSWAVCGQRSADK 62
689************************************************5543 PP
== domain 2 score: 43.8 bits; conditional E-value: 9.7e-15
TRM13 213 seereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
+ +e +Glk+k+li+ R++ l+++gf+++l +Yv++ +slEnvlL+a
tr|A0A1X7SH15|A0A1X7SH15_AMPQE 69 PHAKEPMGLKCKELINLIRVHELRKNGFQTHLLYYVDRRTSLENVLLIA 117
57899******************************************97 PP
>> tr|A0A1X7SJV1|A0A1X7SJV1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.3 0.0 1.8e-26 9.8e-23 1 87 [. 47 131 .. 47 135 .. 0.97
Alignments for each domain:
== domain 1 score: 82.3 bits; conditional E-value: 1.8e-26
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlk 79
lqqss+ig+l++l+ll+++s ++EfGaG+g+ls++++ a ++d e ++Lidr+ + k+D +r d++ ++++Rl
tr|A0A1X7SJV1|A0A1X7SJV1_AMPQE 47 LQQSSIIGHLDSLGLLSSDSLFIEFGAGRGKLSHWIQLASNND--ELIDFLLIDRSNPKRKFDMYHRFDTQGPKFERLL 123
59**************************************888..99******************************** PP
TRM13 80 idIkdLnl 87
idI++L+l
tr|A0A1X7SJV1|A0A1X7SJV1_AMPQE 124 IDIEHLDL 131
******98 PP
>> tr|A0A1X7TNY1|A0A1X7TNY1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.2 0.0 1.6e-25 8.5e-22 1 87 [. 160 244 .. 160 247 .. 0.97
Alignments for each domain:
== domain 1 score: 79.2 bits; conditional E-value: 1.6e-25
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlk 79
lqqss+ig+l++l+ll+++s ++EfGaG+g+ls++++ a ++d e ++Lidr+ + k+D +r d++ ++++Rl
tr|A0A1X7TNY1|A0A1X7TNY1_AMPQE 160 LQQSSIIGHLDSLGLLSSDSLFIEFGAGRGKLSHWIQLASNND--ELIDFLLIDRSNPKRKFDMYHRFDTQGPKFERLL 236
59**************************************888..99******************************** PP
TRM13 80 idIkdLnl 87
idI++L l
tr|A0A1X7TNY1|A0A1X7TNY1_AMPQE 237 IDIEHLYL 244
******87 PP
>> tr|A0A1X7SSD4|A0A1X7SSD4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.0 0.0 6.4e-17 3.5e-13 1 61 [. 136 194 .] 136 194 .] 0.95
Alignments for each domain:
== domain 1 score: 51.0 bits; conditional E-value: 6.4e-17
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlk 61
lqqss+ig+l++l+ll+++s ++EfGaG+g+ls++++ a ++d e ++Lidr+ + k
tr|A0A1X7SSD4|A0A1X7SSD4_AMPQE 136 LQQSSIIGHLDSLGLLSSDSLFIEFGAGRGKLSHWIQLASNND--ELIDFLLIDRSNPKRK 194
59**************************************888..99********998866 PP
>> tr|A0A1X7VTI4|A0A1X7VTI4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.6 0.6 9.4e-07 0.0051 17 139 .. 99 229 .. 82 232 .. 0.66
2 ! 4.5 0.0 0.0095 52 217 261 .. 276 320 .. 249 321 .. 0.83
Alignments for each domain:
== domain 1 score: 17.6 bits; conditional E-value: 9.4e-07
TRM13 17 ekssayvEfGaGkgelsryvnqaleed.......kkenskyvLidrasnrlkaDrklrkdese..........laikRl 78
+k +++++G+G+g+lsry++ ++ + + + ++ +L d++ + + +++de++ + +
tr|A0A1X7VTI4|A0A1X7VTI4_AMPQE 99 TKCCNVIDLGCGQGHLSRYLAYHYQLNviaveavSCHLKTALLYDKQ-ITADIEKTFKNDETKkgnisyieqmIDPEAG 176
4456799****************999999988844444444555554.4566777777777667775555433333333 PP
TRM13 79 kidIkdLnlsaleelekkkkvvavsKHLCGaATDLtLrcllnsekaskkakleglliAlCC 139
++ L ls+ ++ k++++v v+ H CG Lr +se+ ++gl+ CC
tr|A0A1X7VTI4|A0A1X7VTI4_AMPQE 177 PEEVMSLFLSSESK--KREEYVLVGLHTCGNLSTTMLRLFSESES------ITGLVSVGCC 229
44555666665555..89************877666666655544......4566655566 PP
== domain 2 score: 4.5 bits; conditional E-value: 0.0095
TRM13 217 eeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
+ i + li Rll+lkek+ + +l+ ++ vs+ n++L+a
tr|A0A1X7VTI4|A0A1X7VTI4_AMPQE 276 QVIAPCIETLILLDRLLFLKEKNIKCSLQPVFNPLVSPRNLVLTA 320
55555667788889****************************987 PP
>> tr|A0A1X7U111|A0A1X7U111_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.2 1.3e-06 0.0069 126 242 .. 48 165 .. 7 180 .. 0.69
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1.3e-06
TRM13 126 k...kakleglliAlCChhvCswkeyvn.....keyleelgitkeefqiltkmvSWavsgkrkseaeeedekeekekee 196
+++l+ +li h++ +w+ey++ ++ +++ +++ f++++ + + + + +k+++++e+
tr|A0A1X7U111|A0A1X7U111_AMPQE 48 AeryNQTLQNMLIKYVNHKQDQWDEYLDmsvfaYNTSLHHSTHYSPFELMFGCKATLPIDLD-------MKKDTNNEET 119
04447899999999999**********96443322222334444455555555544433333.......2233444444 PP
TRM13 197 kkeeeeseeekksklsseereeiGlkakrlidegRllalkekgfea 242
++++++ +e+ ++l+ ++ ++ k k+li+eg+l+ + ++++
tr|A0A1X7U111|A0A1X7U111_AMPQE 120 ENQDNQDLQETEEELTPMDADRLTEKRKELIEEGKLNIKEAQKKQK 165
4555556667778899******************998766655544 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 3111 (0.0716243); expected 868.7 (0.02)
Passed bias filter: 1230 (0.0283182); expected 868.7 (0.02)
Passed Vit filter: 97 (0.00223322); expected 43.4 (0.001)
Passed Fwd filter: 9 (0.000207206); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.41u 0.01s 00:00:00.42 Elapsed: 00:00:00.12
# Mc/sec: 32131.29
//
[ok]