# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-88 295.9 0.3 3.9e-88 295.4 0.3 1.2 1 tr|G1KBZ1|G1KBZ1_ANOCA tRNA methyltransferase 13 homolog OS=
5.5e-06 26.2 0.2 0.046 13.3 0.2 2.8 2 tr|H9GDY8|H9GDY8_ANOCA Glutathione S-transferase C-terminal
------ inclusion threshold ------
0.18 11.4 0.0 17 4.8 0.0 2.3 2 tr|H9GMB0|H9GMB0_ANOCA Ribosomal RNA adenine dimethylase dom
Domain annotation for each sequence (and alignments):
>> tr|G1KBZ1|G1KBZ1_ANOCA tRNA methyltransferase 13 homolog OS=Anolis carolinensis OX=28377 GN=TRMT13 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 295.4 0.3 6.4e-92 3.9e-88 1 261 [. 162 461 .. 162 462 .. 0.94
Alignments for each domain:
== domain 1 score: 295.4 bits; conditional E-value: 6.4e-92
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnl 87
+qq+s++gn+e+l+ll++ +++vEfGaG+g+ls++v++al+++ +n++++L++ra +r+k+D k+++++ ++Rl++dI++L+l
tr|G1KBZ1|G1KBZ1_ANOCA 162 KQQASILGNMERLELLQPGNCFVEFGAGRGKLSHWVDTALHDA--KNVHFLLVERAATRFKVDGKHSRNS----FERLQVDIQHLCL 242
69**************************************777..9*********************999....9************ PP
TRM13 88 saleele.kkkkvvavsKHLCGaATDLtLrcllnsekask...................................kakleglliAlC 138
+++++l +k +vv+++KH+CGaATDL+Lrcl+++++++ ++ ++g++iAlC
tr|G1KBZ1|G1KBZ1_ANOCA 243 NKVPVLAkEKLPVVGIGKHVCGAATDLALRCLVETYAKHYdnreedpapkrlktdetnetsfcpdetctnsvsenWSPVAGIVIALC 329
******99999************************99877899********************************9*********** PP
TRM13 139 ChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkse.........aeeedekeekekeekkeeeeseeekksklsseer 216
Chh+C+wk+yv++e++++ g+ ++ef+++ +m+SWa++g r++ +ee++++ e+++e+++ +++ ++ + +++eer
tr|G1KBZ1|G1KBZ1_ANOCA 330 CHHRCDWKHYVGQEFFTAAGLGATEFNYFRRMASWATCGLRETArrdtatdgkNEEQSNEAEEHEEDDNGADSNWDSLQGLFTAEER 416
*****************************************777999999885444444455555556667777777888889**** PP
TRM13 217 eeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
++iG+++k lid+gR+++l+++g+ea l+ Y++ +vslEnvlL+a
tr|G1KBZ1|G1KBZ1_ANOCA 417 KQIGRRCKLLIDHGRIEYLQQRGYEAVLQRYTDLSVSLENVLLTA 461
*******************************************97 PP
>> tr|H9GDY8|H9GDY8_ANOCA Glutathione S-transferase C-terminal domain containing OS=Anolis carolinensis OX=28377 GN=GST
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.2 7.5e-06 0.046 73 168 .. 560 655 .. 509 662 .. 0.75
2 ! 10.1 0.0 7.2e-05 0.44 214 260 .. 667 713 .. 649 715 .. 0.91
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 7.5e-06
TRM13 73 laikRlkidIkdLnlsaleelekkkkv......vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhvC.swkeyvn.k 151
l + R k +L l+++ l+ + + ++v+ H CG+ATD+ ++ +++ ++ g+++ CC ++++++ +
tr|H9GDY8|H9GDY8_ANOCA 560 LSLVRAKERSDELGLNNVWFLQANMDYfkgvfnIGVALHACGVATDMVIENCIKIRA--------GFVVSPCCYGFIqNTDKFAFpQ 638
55666666667788888877774444456666699*************998887665........7889999975441344444333 PP
TRM13 152 eyleelgitkeefqilt 168
++ ++ ++++e +l+
tr|H9GDY8|H9GDY8_ANOCA 639 SHQFKEVLSYKEHMVLC 655
33444455555555555 PP
== domain 2 score: 10.1 bits; conditional E-value: 7.2e-05
TRM13 214 eereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLl 260
er++iG+ + l+d R+++ ++ +++++++ +++ s+ n l++
tr|H9GDY8|H9GDY8_ANOCA 667 PERRQIGKHCMGLVDLDRAWNAERSNYSVQVISMEPETCSPKNNLIV 713
48999*************************************99886 PP
>> tr|H9GMB0|H9GMB0_ANOCA Ribosomal RNA adenine dimethylase domain containing 1 OS=Anolis carolinensis OX=28377 GN=RRNA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.1 0.0 0.0048 30 8 37 .. 149 178 .. 142 211 .. 0.87
2 ? 4.8 0.0 0.0028 17 230 261 .. 432 463 .. 423 464 .. 0.90
Alignments for each domain:
== domain 1 score: 4.1 bits; conditional E-value: 0.0048
TRM13 8 gnleelkllekssayvEfGaGkgelsryvn 37
+ +++l +l+ +++v+ G+G+g+lsr+++
tr|H9GMB0|H9GMB0_ANOCA 149 QVVKRLSDLTGCQQVVDVGSGQGHLSRFLA 178
66788889999999*************997 PP
== domain 2 score: 4.8 bits; conditional E-value: 0.0028
TRM13 230 gRllalkekgfeaelvkYvekevslEnvlLla 261
R+ +l+e+gf+ el +++ s+ n++Lla
tr|H9GMB0|H9GMB0_ANOCA 432 DRMIYLQEQGFQCELLPLFDPHFSPRNLVLLA 463
69****************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 18528 (9796552 residues searched)
Passed MSV filter: 1483 (0.080041); expected 370.6 (0.02)
Passed bias filter: 542 (0.029253); expected 370.6 (0.02)
Passed Vit filter: 57 (0.00307642); expected 18.5 (0.001)
Passed Fwd filter: 6 (0.000323834); expected 0.2 (1e-05)
Initial search space (Z): 18528 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.28u 0.01s 00:00:00.29 Elapsed: 00:00:00.09
# Mc/sec: 28518.85
//
[ok]