# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-87 293.8 1.6 2.8e-87 293.2 1.6 1.3 1 tr|C3YCH1|C3YCH1_BRAFL Uncharacterized protein OS=Branchiost
0.0027 18.0 0.3 3.4 7.8 0.0 2.4 3 tr|C3Z7E1|C3Z7E1_BRAFL Uncharacterized protein OS=Branchiost
------ inclusion threshold ------
0.14 12.3 0.0 0.18 11.9 0.0 1.2 1 tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiost
0.23 11.6 0.0 0.34 11.0 0.0 1.3 1 tr|C3Y0I3|C3Y0I3_BRAFL Uncharacterized protein OS=Branchiost
Domain annotation for each sequence (and alignments):
>> tr|C3YCH1|C3YCH1_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_285163 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 293.2 1.6 3.9e-91 2.8e-87 1 261 [. 160 455 .. 160 456 .. 0.94
Alignments for each domain:
== domain 1 score: 293.2 bits; conditional E-value: 3.9e-91
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnl 87
+qq+slig+l++l+ll+++ +++EfGaG+g+ls+yv+++l e+ ++s+++ idra +++k+D+ +r+ e+ + ++Rlk+dI+dLnl
tr|C3YCH1|C3YCH1_BRAFL 160 KQQASLIGHLDHLDLLKSDVCFIEFGAGRGRLSHYVQMCLPEQ--AASHFIVIDRANTKHKFDKNIRRGEKGPDFERLKVDIEDLNL 244
69**************************************999..99**************************************** PP
TRM13 88 saleele.kkkkvvavsKHLCGaATDLtLrcllnsekask.....................................kakleglliA 136
++++ +k +v a+sKHLCGaATDLtLrcl+++ ++++ + e +liA
tr|C3YCH1|C3YCH1_BRAFL 245 GLVPSMAeHKGPVAAISKHLCGAATDLTLRCLIETLHCKSsrnsskevftssstsetasrqhpvsdniaqesnttekQLVDECILIA 331
*****998889999**********************998899********************************9744445789*** PP
TRM13 137 lCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeekksklsseereeiGlka 223
lCChh+C w +yv+k ++++ g+t+e+f++l +m+SWa++g + ++++ +e+e +e++eee++ee+ ++eereeiG+++
tr|C3YCH1|C3YCH1_BRAFL 332 LCCHHRCTWTSYVGKGFFTSIGFTEEDFHLLRSMSSWATCGFARGQTKNAG-GNEEEVKENSEEEGEEEKAAAIWTVEEREEIGRQC 417
*****************************************9977777766.44555556667888888999999************ PP
TRM13 224 krlidegRllalkekgfeaelvkYvekevslEnvlLla 261
krl+d+gRl++l++ +f+++lv Yve++vslEn++++a
tr|C3YCH1|C3YCH1_BRAFL 418 KRLLDQGRLWYLQQCDFNTQLVHYVEPDVSLENIAIVA 455
***********************************997 PP
>> tr|C3Z7E1|C3Z7E1_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_200329 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.6 0.2 0.00054 3.9 20 109 .. 156 263 .. 134 288 .. 0.74
2 ? -2.9 0.0 0.86 6.1e+03 31 64 .. 300 332 .. 269 339 .. 0.73
3 ! 7.8 0.0 0.00048 3.4 229 261 .. 428 460 .. 415 461 .. 0.89
Alignments for each domain:
== domain 1 score: 7.6 bits; conditional E-value: 0.00054
TRM13 20 sayvEfGaGkgelsryvnqaleed.............kkenskyvLidrasnrlkaDrklrkdese.....laikRlkidIkdLnls 88
s++v++G+G+g+lsr++ a++ + + k v d +++++k+ + de +++ lk d++++
tr|C3Z7E1|C3Z7E1_BRAFL 156 SNVVDIGSGQGHLSRVLSFAHRLNvtsveaegchvtgAARFDKQVVTDITKEKMKKQQEADIDEVLhaqpsHVTCFLKP---DISVD 239
5799***************999889999999999998888888899999999999877777666434333333333333...55566 PP
TRM13 89 aleele...kkkkvvavsKHLCGa 109
+++++ ++k + +v+ H CG
tr|C3Z7E1|C3Z7E1_BRAFL 240 DFLSVDapcDRKAFSMVGLHTCGD 263
666666666888889999999995 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.86
TRM13 31 elsryvnqaleedkkenskyvLidrasnrlkaDr 64
++++ +n ++ + + + + id ++rlk D
tr|C3Z7E1|C3Z7E1_BRAFL 300 QMAQNLNAEMSYQ-ARELACHAIDMYTERLKSDD 332
5555555555444.44455556888888888886 PP
== domain 3 score: 7.8 bits; conditional E-value: 0.00048
TRM13 229 egRllalkekgfeaelvkYvekevslEnvlLla 261
R+++lke+g + +lv ++ +s+ n++Lla
tr|C3Z7E1|C3Z7E1_BRAFL 428 LDRMQYLKEHGTNCQLVPLFNPRLSPRNFVLLA 460
56*****************************98 PP
>> tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_99360 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 2.6e-05 0.18 2 41 .. 55 94 .. 54 126 .. 0.83
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 2.6e-05
TRM13 2 qqsslignleelkllekssayvEfGaGkgelsryvnqale 41
qq+ + ++++ +++ ++++ G+G ge+s+yv+q +
tr|C3ZHD7|C3ZHD7_BRAFL 55 QQEIAVMLMHQNFEWQEGDTVLDVGCGTGEISKYVAQQHG 94
666667778888889*********************9874 PP
>> tr|C3Y0I3|C3Y0I3_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_92966 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.0 0.0 4.8e-05 0.34 21 44 .. 49 73 .. 23 94 .. 0.78
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 4.8e-05
TRM13 21 ayvEfGaGkgelsryvnqaleed.k 44
+ +++G+Gkg++s+y+n+ + e
tr|C3Y0I3|C3Y0I3_BRAFL 49 VALDLGCGKGYISKYLNKDIVETlY 73
6789**************9987752 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 1724 (0.0604022); expected 570.8 (0.02)
Passed bias filter: 769 (0.0269428); expected 570.8 (0.02)
Passed Vit filter: 72 (0.0025226); expected 28.5 (0.001)
Passed Fwd filter: 6 (0.000210217); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.34u 0.01s 00:00:00.35 Elapsed: 00:00:00.10
# Mc/sec: 34709.99
//
[ok]