# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-50 170.5 0.0 1.9e-47 162.1 0.0 2.5 1 tr|Q9XW93|Q9XW93_CAEEL Uncharacterized protein OS=Caenorhabd
0.00036 20.3 0.1 0.035 13.8 0.1 2.3 2 tr|Q93574|Q93574_CAEEL Uncharacterized protein OS=Caenorhabd
Domain annotation for each sequence (and alignments):
>> tr|Q9XW93|Q9XW93_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y49A3A.3 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 162.1 0.0 1.9e-51 1.9e-47 2 261 .. 159 388 .. 158 389 .. 0.92
Alignments for each domain:
== domain 1 score: 162.1 bits; conditional E-value: 1.9e-51
TRM13 2 qqsslignleelkll..ekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLn 86
q ss++g++e+++ll ++s++ E+GaGkg+l+ ++ +a+ n +y+L+dr+ r+k+D+ +++ +l +kR + I++++
tr|Q9XW93|Q9XW93_CAEEL 159 QISSILGHIESTGLLptCSKSCMFELGAGKGQLAYWISKAA-----PNGNYILMDRSGSRNKFDTAAFRENPNLSMKRFRCSIEHMD 240
789***********9777899*******************9.....566****************98888889************** PP
TRM13 87 lsaleelekkkkvvavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhvCswkeyvnkeyleelgitke.efqiltkmvS 172
ls++ el++++k++a+ KH+CG ATD +r+l+ns + ++++l+ CChh +++ ey ++ +le++++++e +f++l +++S
tr|Q9XW93|Q9XW93_CAEEL 241 LSKIDELKNSEKILAICKHFCGSATDAGIRSLMNSGLQ-----FNAALLIPCCHHKSRFAEYGGHDFLEKWEMNDEaSFAALRYIAS 322
**********************************9995.....8899999************************************* PP
TRM13 173 WavsgkrkseaeeedekeekekeekkeeeeseeekksklsseereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlL 259
+a++g d + e + + s++ e+G++ak ++++gR+ +l++ gf++++v+Yv++evs+En+l+
tr|Q9XW93|Q9XW93_CAEEL 323 FATNGAV-------D---------T----E---ATEGWKSIHPPLELGRRAKAILEIGRAIWLESVGFKTRVVEYVPPEVSPENLLI 386
*****99.......1.........1....1...1222335667789***************************************99 PP
TRM13 260 la 261
la
tr|Q9XW93|Q9XW93_CAEEL 387 LA 388
87 PP
>> tr|Q93574|Q93574_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F25H2.12 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.1 3.5e-06 0.035 8 150 .. 137 287 .. 131 314 .. 0.62
2 ! 4.1 0.0 0.0032 32 227 261 .. 443 476 .. 438 477 .. 0.91
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 3.5e-06
TRM13 8 gnleelkllekss.....ayvEfGaGkgelsryvnqaleed.............kkenskyvLidrasnrlkaDrklrkdeselaik 76
+ +++ ++++k+s +v++GaG g+lsr++ + + ++ + +L+d a+ ++ + k + + ++
tr|Q93574|Q93574_CAEEL 137 ELISQIQIFQKDSadpidSLVDIGAGIGHLSRMISIHNNISvmavegnqqftlaANSLDEKLLLDSAKIGSRIENFNVKSTP-IRYT 222
55566666655555555589**************986555566755556665555555556666666666666555555542.4444 PP
TRM13 77 RlkidIkdLnlsaleelekkkkvvavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhv.Cswkeyvn 150
++ L+++ + + ++ + v+ H CG L+ +sek ++l++ CC h + +++
tr|Q93574|Q93574_CAEEL 223 NFVTEDLALKIDDFAV----NSAILVGLHCCGDFSSTILKVFQKSEK------SKALVLFGCCYHKeFQCFHFLR 287
4444444455555655....68899*******766666666655555......4678888888764156666665 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.0032
TRM13 227 idegRllalkekgfeaelvkYvekevslEnvlLla 261
id R++ l+e+g ++++v e+++s+ n++++a
tr|Q93574|Q93574_CAEEL 443 ID-DRVELLRENGINSRVVPLFEPSISPRNLAIIA 476
44.59****************************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 1492 (0.0745702); expected 400.2 (0.02)
Passed bias filter: 556 (0.0277889); expected 400.2 (0.02)
Passed Vit filter: 50 (0.002499); expected 20.0 (0.001)
Passed Fwd filter: 2 (9.996e-05); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.08
# Mc/sec: 26950.70
//
[ok]