# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-08 34.0 1.9 0.00017 20.6 1.5 2.4 2 tr|H2YWU1|H2YWU1_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2YWU1|H2YWU1_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 1.5 1.5e-08 0.00017 53 167 .. 410 510 .. 366 523 .. 0.63
2 ! 11.7 0.0 7.5e-06 0.087 213 260 .. 522 569 .. 511 571 .. 0.91
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 1.5e-08
TRM13 53 idrasnrlkaDrklrkdeselaikRlkidIkdLnlsaleele.kkkkv.....vavsKHLCGaATDLtLrcllnsekaskkaklegl 133
++ + ++R I+ L+l+++ + + +++ ++++ H CG+ATD+ L+ +++++++ +
tr|H2YWU1|H2YWU1_CIOSA 410 VENKE---------------ESLDRAYQRIQTLKLKNIMLYQcNLDQFskdfdIGIALHACGVATDMVLQKCISNHAS--------F 473
44333...............345555555555555555544432222233344****************988877664........7 PP
TRM13 134 liAlCChhvCswk...eyvnkeyleelgitkeefqil 167
+i CC + +y ++++++++ i++e++ +l
tr|H2YWU1|H2YWU1_CIOSA 474 VISPCCYGKIQNTatlTYPQSSMFKNSLISYEQLVLL 510
9999998554433111555577777777777766555 PP
== domain 2 score: 11.7 bits; conditional E-value: 7.5e-06
TRM13 213 seereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLl 260
+e+++ G+ + l+d R+++ e ++ +++ + +++ s+ n l++
tr|H2YWU1|H2YWU1_CIOSA 522 ESEKSKQGKHCMGLVDSDRCHFATESNYRTKMYTMLPTNCSPKNNLIV 569
57899***************************************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 755 (0.0651311); expected 231.8 (0.02)
Passed bias filter: 290 (0.0250173); expected 231.8 (0.02)
Passed Vit filter: 24 (0.00207039); expected 11.6 (0.001)
Passed Fwd filter: 1 (8.62664e-05); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.04
# Mc/sec: 27715.65
//
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