# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TRM13.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TRM13 [M=262] Accession: PF05206.13 Description: Methyltransferase TRM13 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-44 150.6 0.0 1.1e-33 116.0 0.0 2.1 2 tr|A9V6G4|A9V6G4_MONBE Predicted protein OS=Monosiga brevico 0.0063 15.1 0.1 0.009 14.6 0.1 1.2 1 tr|A9V492|A9V492_MONBE Predicted protein OS=Monosiga brevico ------ inclusion threshold ------ 0.015 13.9 0.1 0.019 13.6 0.1 1.1 1 tr|A9UQI4|A9UQI4_MONBE Uncharacterized protein (Fragment) OS Domain annotation for each sequence (and alignments): >> tr|A9V6G4|A9V6G4_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=27936 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 116.0 0.0 3.5e-37 1.1e-33 2 177 .. 175 365 .. 174 369 .. 0.87 2 ! 34.3 0.1 2.8e-12 8.7e-09 210 261 .. 362 414 .. 359 415 .. 0.92 Alignments for each domain: == domain 1 score: 116.0 bits; conditional E-value: 3.5e-37 TRM13 2 qqsslignleelkllekss......ayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdese.laikRlkid 81 q+ssl + + ++ ++++ +vEfGaG+++l + + +al + + ++y+ ++r++ rlkaDr +r + + + ++Rl++d tr|A9V6G4|A9V6G4_MONBE 175 QNSSLSRLITDDGVPDQDTssalppLVVEFGAGRAHLLHCLRHALGWS--SPAAYLALERDTIRLKADRYHRARPEPaVSYSRLRAD 259 667777777777776555556666689******************666..999*******************999756899****** PP TRM13 82 IkdLnlsaleele..kkkkv...........vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhvCswkeyvnkeyle 155 I + l a + + ++ va KHLCGaATD++++++++ ++a l+ + A+CChh+C w +y n+ +le tr|A9V6G4|A9V6G4_MONBE 260 IANVVLAATVDAQppD-VSTtpasaaplrplVACWKHLCGAATDFAIQAIVHYQAA--GGVLRHVTGATCCHHRCTWGTYCNRPWLE 343 ******9988867632.33358899999999************************9..67*************************** PP TRM13 156 elgitkeefqiltkmvSWavsg 177 ++g+t + f i+t+m+ v+ tr|A9V6G4|A9V6G4_MONBE 344 AHGVTPDTFGIMTRMATMNVTT 365 ***************9988765 PP == domain 2 score: 34.3 bits; conditional E-value: 2.8e-12 TRM13 210 klsseereeiGlkakrlidegRllalkek.gfeaelvkYvekevslEnvlLla 261 ++++++ e+G+++kr +d+gR+l+l+ + g+ lv+Yv+++v++Env+L+ tr|A9V6G4|A9V6G4_MONBE 362 NVTTAQMVELGYRCKRALDYGRALYLRAQlGVPLCLVEYVDQKVTRENVCLTS 414 56788889*******************9889********************85 PP >> tr|A9V492|A9V492_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=27083 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 0.1 2.9e-06 0.009 83 124 .. 192 242 .. 150 266 .. 0.76 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 2.9e-06 TRM13 83 kdLnlsaleele.kkkkv........vavsKHLCGaATDLtLrcllnseka 124 +L+l ++++ + +++ ++v+ H+CG+ TDL+L++++++++a tr|A9V492|A9V492_MONBE 192 AQLKLTNVSVCIgDMESFaemalpfdLGVGLHFCGMLTDLALNACISQHAA 242 5566666665553333335556666799***************99988764 PP >> tr|A9UQI4|A9UQI4_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=22416 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 6.1e-06 0.019 39 105 .. 25 88 .. 7 92 .. 0.80 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 6.1e-06 TRM13 39 aleedkkenskyvLidrasnrl.kaDrklrkdeselaikRlkidIkdLnlsaleelekkkkvvavsKH 105 +++++++++++yvL+ r+ l ++ + ++ ++++ +++ l++d+ dL s+l++l + vv +KH tr|A9UQI4|A9UQI4_MONBE 25 SAQNAQQKAAHYVLVARNADELhQVEKEIQARHADAVVTVLRADLGDL--SKLPQLM--QDVVSAAKH 88 444558899********98876489999*****99***********97..6888865..789999999 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (262 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 608 (0.0661733); expected 183.8 (0.02) Passed bias filter: 315 (0.0342838); expected 183.8 (0.02) Passed Vit filter: 50 (0.00544188); expected 9.2 (0.001) Passed Fwd filter: 4 (0.00043535); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.06 # Mc/sec: 24068.91 // [ok]