# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-44 150.6 0.0 1.1e-33 116.0 0.0 2.1 2 tr|A9V6G4|A9V6G4_MONBE Predicted protein OS=Monosiga brevico
0.0063 15.1 0.1 0.009 14.6 0.1 1.2 1 tr|A9V492|A9V492_MONBE Predicted protein OS=Monosiga brevico
------ inclusion threshold ------
0.015 13.9 0.1 0.019 13.6 0.1 1.1 1 tr|A9UQI4|A9UQI4_MONBE Uncharacterized protein (Fragment) OS
Domain annotation for each sequence (and alignments):
>> tr|A9V6G4|A9V6G4_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=27936 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 116.0 0.0 3.5e-37 1.1e-33 2 177 .. 175 365 .. 174 369 .. 0.87
2 ! 34.3 0.1 2.8e-12 8.7e-09 210 261 .. 362 414 .. 359 415 .. 0.92
Alignments for each domain:
== domain 1 score: 116.0 bits; conditional E-value: 3.5e-37
TRM13 2 qqsslignleelkllekss......ayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdese.laikRlkid 81
q+ssl + + ++ ++++ +vEfGaG+++l + + +al + + ++y+ ++r++ rlkaDr +r + + + ++Rl++d
tr|A9V6G4|A9V6G4_MONBE 175 QNSSLSRLITDDGVPDQDTssalppLVVEFGAGRAHLLHCLRHALGWS--SPAAYLALERDTIRLKADRYHRARPEPaVSYSRLRAD 259
667777777777776555556666689******************666..999*******************999756899****** PP
TRM13 82 IkdLnlsaleele..kkkkv...........vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhvCswkeyvnkeyle 155
I + l a + + ++ va KHLCGaATD++++++++ ++a l+ + A+CChh+C w +y n+ +le
tr|A9V6G4|A9V6G4_MONBE 260 IANVVLAATVDAQppD-VSTtpasaaplrplVACWKHLCGAATDFAIQAIVHYQAA--GGVLRHVTGATCCHHRCTWGTYCNRPWLE 343
******9988867632.33358899999999************************9..67*************************** PP
TRM13 156 elgitkeefqiltkmvSWavsg 177
++g+t + f i+t+m+ v+
tr|A9V6G4|A9V6G4_MONBE 344 AHGVTPDTFGIMTRMATMNVTT 365
***************9988765 PP
== domain 2 score: 34.3 bits; conditional E-value: 2.8e-12
TRM13 210 klsseereeiGlkakrlidegRllalkek.gfeaelvkYvekevslEnvlLla 261
++++++ e+G+++kr +d+gR+l+l+ + g+ lv+Yv+++v++Env+L+
tr|A9V6G4|A9V6G4_MONBE 362 NVTTAQMVELGYRCKRALDYGRALYLRAQlGVPLCLVEYVDQKVTRENVCLTS 414
56788889*******************9889********************85 PP
>> tr|A9V492|A9V492_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=27083 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.1 2.9e-06 0.009 83 124 .. 192 242 .. 150 266 .. 0.76
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.9e-06
TRM13 83 kdLnlsaleele.kkkkv........vavsKHLCGaATDLtLrcllnseka 124
+L+l ++++ + +++ ++v+ H+CG+ TDL+L++++++++a
tr|A9V492|A9V492_MONBE 192 AQLKLTNVSVCIgDMESFaemalpfdLGVGLHFCGMLTDLALNACISQHAA 242
5566666665553333335556666799***************99988764 PP
>> tr|A9UQI4|A9UQI4_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=22416 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.1 6.1e-06 0.019 39 105 .. 25 88 .. 7 92 .. 0.80
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 6.1e-06
TRM13 39 aleedkkenskyvLidrasnrl.kaDrklrkdeselaikRlkidIkdLnlsaleelekkkkvvavsKH 105
+++++++++++yvL+ r+ l ++ + ++ ++++ +++ l++d+ dL s+l++l + vv +KH
tr|A9UQI4|A9UQI4_MONBE 25 SAQNAQQKAAHYVLVARNADELhQVEKEIQARHADAVVTVLRADLGDL--SKLPQLM--QDVVSAAKH 88
444558899********98876489999*****99***********97..6888865..789999999 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 608 (0.0661733); expected 183.8 (0.02)
Passed bias filter: 315 (0.0342838); expected 183.8 (0.02)
Passed Vit filter: 50 (0.00544188); expected 9.2 (0.001)
Passed Fwd filter: 4 (0.00043535); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.06
# Mc/sec: 24068.91
//
[ok]