# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.9e-94 314.5 0.0 9.3e-94 314.1 0.0 1.2 1 sp|Q8BYH3|TRM13_MOUSE tRNA:m(4)X modification enzyme TRM13 h
1.6e-05 24.9 0.4 0.27 11.1 0.9 2.7 2 sp|Q5RL51|GSTCD_MOUSE Glutathione S-transferase C-terminal d
------ inclusion threshold ------
0.14 11.9 0.0 15 5.3 0.0 2.3 2 sp|Q8BZG5|RRNAD_MOUSE Protein RRNAD1 OS=Mus musculus OX=1009
Domain annotation for each sequence (and alignments):
>> sp|Q8BYH3|TRM13_MOUSE tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus OX=10090 GN=Trmt13 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 314.1 0.0 1.3e-97 9.3e-94 1 261 [. 165 468 .. 165 469 .. 0.98
Alignments for each domain:
== domain 1 score: 314.1 bits; conditional E-value: 1.3e-97
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnls 88
+qq+s++gn+e+lkll +++++vEfGaGkg+ls++v+ al+++ en++++L++r ++r+k+D k+rk++s +++Rl+idI++L+l+
sp|Q8BYH3|TRM13_MOUSE 165 KQQASILGNIEKLKLLGPRRCFVEFGAGKGKLSHWVDIALKDA--ENVHFILVERVTTRFKVDGKHRKKDS--VFERLQIDIQHLCLN 248
69**************************************777..*************************7..*************** PP
TRM13 89 aleele.kkkkvvavsKHLCGaATDLtLrcllnsekask....................................kakleglliAlCC 139
++++l+ + +vv+++KHLCG+ATD++Lrcl+++++as ++ ++g++iAlCC
sp|Q8BYH3|TRM13_MOUSE 249 RVPVLReGRLPVVGIGKHLCGVATDVALRCLVETYAASFeekdeeplakrikndktekesntlakegsekdvpetWTPVAGIVIALCC 336
******999***************************99999*********************************************** PP
TRM13 140 hhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkse..........aeeedekeekekeekkeeeeseeekksklsseere 217
hh+C+w++yv+key+++lg+ + ef+++++m+SWa++g+r+s ++++de+ee+++ ++ +++++++ + l++ee++
sp|Q8BYH3|TRM13_MOUSE 337 HHRCDWRHYVGKEYFKALGLGAVEFYYFQRMSSWATCGMRTSLegsdvtperkDAQRDENEEHDDGGDRLTDGNTDSLPGILTVEEKK 424
****************************************8889*******998889999999999********************** PP
TRM13 218 eiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
+iG+ +k lid+gRl++l++kgf+++l++Y+++ vslEnvlL+a
sp|Q8BYH3|TRM13_MOUSE 425 KIGHLCKLLIDQGRLQYLQQKGFSPALQYYTDPLVSLENVLLTA 468
******************************************97 PP
>> sp|Q5RL51|GSTCD_MOUSE Glutathione S-transferase C-terminal domain-containing protein OS=Mus musculus OX=10090 GN=Gst
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.9 3.6e-05 0.27 75 140 .. 479 542 .. 438 581 .. 0.72
2 ! 11.0 0.0 3.7e-05 0.28 214 260 .. 584 630 .. 555 632 .. 0.89
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 3.6e-05
TRM13 75 ikRlkidIkdLnlsaleelekkkkv......vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCCh 140
+ R k +L ls++ ++ + ++ ++v+ H CG+ATD+ ++ +++++++ ++ CC
sp|Q5RL51|GSTCD_MOUSE 479 LIRAKKRSDELGLSNIWFIQANMEYftgmfnIGVALHACGVATDMVIEHCIQTRAS--------FITCPCCY 542
5555555566666666666645555566666999*************999988764........34445555 PP
== domain 2 score: 11.0 bits; conditional E-value: 3.7e-05
TRM13 214 eereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLl 260
er+ iG+++ l+d R+ a e+g++++++ +++ s+ n +++
sp|Q5RL51|GSTCD_MOUSE 584 PERRLIGKQCMGLVDLDRAAAAGEHGYSVQVISMEPESCSPKNNMIV 630
47999*************************************99886 PP
>> sp|Q8BZG5|RRNAD_MOUSE Protein RRNAD1 OS=Mus musculus OX=10090 GN=Rrnad1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.2 0.0 0.0043 32 8 38 .. 143 173 .. 138 215 .. 0.81
2 ? 5.3 0.0 0.002 15 226 261 .. 423 458 .. 417 459 .. 0.90
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.0043
TRM13 8 gnleelkllekssayvEfGaGkgelsryvnq 38
+ +++l +l+ +++v+ G+G+g+lsr++
sp|Q8BZG5|RRNAD_MOUSE 143 ELVKKLSDLTGCTQVVDVGSGQGHLSRFMSL 173
5678888999999**************9876 PP
== domain 2 score: 5.3 bits; conditional E-value: 0.002
TRM13 226 lidegRllalkekgfeaelvkYvekevslEnvlLla 261
li R+l+l+e+gf ael +e+s+ n++L+a
sp|Q8BZG5|RRNAD_MOUSE 423 LILLDRMLYLQEQGFYAELLPIFSPELSPRNLVLVA 458
66667*****************************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 22289 (11757923 residues searched)
Passed MSV filter: 1529 (0.0685989); expected 445.8 (0.02)
Passed bias filter: 648 (0.0290726); expected 445.8 (0.02)
Passed Vit filter: 58 (0.00260218); expected 22.3 (0.001)
Passed Fwd filter: 5 (0.000224326); expected 0.2 (1e-05)
Initial search space (Z): 22289 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.31u 0.01s 00:00:00.32 Elapsed: 00:00:00.10
# Mc/sec: 30805.76
//
[ok]