# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TRM13.hmm.txt # target sequence database: proteomes/Ornithorhynchus_anatinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TRM13 [M=262] Accession: PF05206.13 Description: Methyltransferase TRM13 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-88 295.9 0.0 4.3e-88 295.5 0.0 1.1 1 tr|F7DDP2|F7DDP2_ORNAN tRNA methyltransferase 13 homolog OS= Domain annotation for each sequence (and alignments): >> tr|F7DDP2|F7DDP2_ORNAN tRNA methyltransferase 13 homolog OS=Ornithorhynchus anatinus OX=9258 GN=TRMT13 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 295.5 0.0 2e-92 4.3e-88 1 261 [. 117 422 .. 117 423 .. 0.96 Alignments for each domain: == domain 1 score: 295.5 bits; conditional E-value: 2e-92 TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnl 87 +qq+s++gn+e+lkll +++++vEfGaG+g+ls++v++ale + en++++L++r +r+k+D k+rk++s ++Rl+idI++L+l tr|F7DDP2|F7DDP2_ORNAN 117 KQQASILGNIEKLKLLGPRRCFVEFGAGRGKLSHWVDTALEGA--ENVHFYLVERVATRFKVDGKHRKRNS--MFERLQIDIQHLCL 199 69**************************************666..*************************6..************** PP TRM13 88 saleele.kkkkvvavsKHLCGaATDLtLrcllnsekask.....................................kakleglliA 136 +++ l kk ++++++KHLCG+ATDL+Lrcl++++ a+ + ++g++iA tr|F7DDP2|F7DDP2_ORNAN 200 GKIPMLVeKKLPLIGIGKHLCGVATDLALRCLVETYVAQCekrseepsvkriksekeeaketntreedgkeenvpeaWPPVAGIVIA 286 *****98899*************************99877899******************************************** PP TRM13 137 lCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkse............aeeedekeekekeekkeeeeseeekkskl 211 lCChh+C+w +yv+ke++++l + ef ++++++SWa++g+r++ ++ +ee++ +++ +++ ++ l tr|F7DDP2|F7DDP2_ORNAN 287 LCCHHRCDWTHYVGKEFFRALALGPVEFGYFQRLSSWATCGMRETAaetskteprgqgC-QSADNEEHQPGACRHADDKPDSLHGLL 372 *******************************************77799******99642.3344678888999999*********** PP TRM13 212 sseereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261 s+eer++iG+ +krlid+gR+l+l++kg++ael++Y++++vslEnvlL+a tr|F7DDP2|F7DDP2_ORNAN 373 SAEERKNIGRLCKRLIDQGRVLYLQQKGYDAELQYYTDPSVSLENVLLTA 422 ************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (262 nodes) Target sequences: 21677 (8259262 residues searched) Passed MSV filter: 1207 (0.0556811); expected 433.5 (0.02) Passed bias filter: 577 (0.0266181); expected 433.5 (0.02) Passed Vit filter: 65 (0.00299857); expected 21.7 (0.001) Passed Fwd filter: 2 (9.22637e-05); expected 0.2 (1e-05) Initial search space (Z): 21677 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.08 # Mc/sec: 27049.08 // [ok]