# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-73 246.6 0.0 3.8e-73 245.8 0.0 1.4 1 tr|S4R6T0|S4R6T0_PETMA tRNA methyltransferase 13 homolog (S.
------ inclusion threshold ------
0.096 11.8 0.1 0.12 11.5 0.1 1.2 1 tr|S4RUU2|S4RUU2_PETMA Uncharacterized protein OS=Petromyzon
Domain annotation for each sequence (and alignments):
>> tr|S4R6T0|S4R6T0_PETMA tRNA methyltransferase 13 homolog (S. cerevisiae) OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 245.8 0.0 5.7e-77 3.8e-73 1 261 [. 172 475 .] 172 475 .] 0.93
Alignments for each domain:
== domain 1 score: 245.8 bits; conditional E-value: 5.7e-77
TRM13 1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnl 87
+qq+s++g+l+ +ll ++s+ E GaG+g+ls+++ +al + + ++++L++r s+r+k+D k+++ + + ++Rl idI++L+l
tr|S4R6T0|S4R6T0_PETMA 172 QQQASIVGHLSTYGLLAHKSVTHECGAGRGKLSHWLWRALPGA-TRGVSFLLVERCSTRFKVDGKHQEGD--VDFRRLLIDIQHLHL 255
59**************************************777.8899********************99..7************** PP
TRM13 88 saleele.kkkkvvavsKHLCGaATDLtLrcllnsekask........................kakleglliAlCChhvCswkeyv 149
++++l+ k+++vva++KHLCGaATDL+Lrcl+++ + + g++i lCChh+Csw yv
tr|S4R6T0|S4R6T0_PETMA 256 GKVPQLQdKGTSVVAIGKHLCGAATDLALRCLMETLPRHGtraaapglaacgeeapgqapcetgTGPTLGIAITLCCHHRCSWPAYV 342
*******999************************99876689********************9988999****************** PP
TRM13 150 nkeyleelgitkeefqiltkmvSWavsgkrkse.....................aeeedekeekekeekkeeeeseeekksklssee 215
+key+ ++g+ +ef+++++m+SWa++g r+ + e +++ee e ++ + ++e++ + s++e
tr|S4R6T0|S4R6T0_PETMA 343 GKEYFCSQGLGPKEFDLIQRMSSWATCGWRRPTdqvpdngnedatreerasrqgGVEWHAEEEMEAIDHAAPCQAEDQISYGRSRAE 429
****************************9977799**********99998776623333455566666677888899999999**** PP
TRM13 216 reeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
re++G+ +kr++degR+ +l+e g+ a+l+ Yve+ ++ EnvlL+a
tr|S4R6T0|S4R6T0_PETMA 430 REQLGRLCKRVLDEGRVRYLREWGLTARLQRYVEAGTTVENVLLTA 475
*******************************************986 PP
>> tr|S4RUU2|S4RUU2_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.1 1.8e-05 0.12 126 172 .. 164 224 .. 129 277 .. 0.80
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 1.8e-05
TRM13 126 k.........kakleglliAlCChhvCswkeyvn.....keyleelgitkeefqiltkmvS 172
+ ++++gl +A CC h ++++ + e++e++g+++ + +lt S
tr|S4RUU2|S4RUU2_PETMA 164 QtvggcfmslMNQMHGLYLAYCCNHPWAVRTLQEhsevlGEFMESKGVSSPGLLMLTTSLS 224
24555555557899*****************999998999999****99998888876655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 13539 (5048892 residues searched)
Passed MSV filter: 661 (0.0488219); expected 270.8 (0.02)
Passed bias filter: 319 (0.0235616); expected 270.8 (0.02)
Passed Vit filter: 36 (0.00265899); expected 13.5 (0.001)
Passed Fwd filter: 2 (0.000147721); expected 0.1 (1e-05)
Initial search space (Z): 13539 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.12u 0.00s 00:00:00.12 Elapsed: 00:00:00.04
# Mc/sec: 33070.24
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