# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-75 251.6 0.0 4.7e-75 250.9 0.0 1.3 1 sp|Q12383|TRM13_YEAST tRNA:m(4)X modification enzyme TRM13 O
Domain annotation for each sequence (and alignments):
>> sp|Q12383|TRM13_YEAST tRNA:m(4)X modification enzyme TRM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 250.9 0.0 7.8e-79 4.7e-75 1 261 [. 179 473 .. 179 474 .. 0.91
Alignments for each domain:
== domain 1 score: 250.9 bits; conditional E-value: 7.8e-79
TRM13 1 lqqsslignleelkll..ekssayvEfGaGkgelsryvnqaleed.........kkenskyvLidrasnrlkaDrklrkdese..... 72
+qqssli+nl +++ + +s +++EfG+G++e+sryv l ++ ++ +++vLidra+nr+k+D+k+++d se
sp|Q12383|TRM13_YEAST 179 VQQSSLIENLVDAGAFerPESLNFIEFGCGRAEFSRYVSLYLLTQltslpaehsGSNSNEFVLIDRATNRMKFDKKIKDDFSEiksns 266
69**************4445679*****************9999999****99888899*********************9999**** PP
TRM13 73 .......laikRlkidIkdLnlsaleele..kkkkvvavsKHLCGaATDLtLrcllnsekask......kakleglliAlCChhvCsw 145
+ ikR+kidI+dL+++ +++ + ++ ++v +sKHLCG+ATDLtLrc+ ns+ + + kl++++iA+CC+hvC++
sp|Q12383|TRM13_YEAST 267 pskpiscPSIKRIKIDIRDLKMDPILKSTpgDDIQYVCISKHLCGVATDLTLRCIGNSSILHGddnngcNPKLKAICIAMCCRHVCDY 354
*************************997789999**********************9987766788999******************* PP
TRM13 146 keyvn........key.leelgitke.efqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeekksklsseereeiGlka 223
+yvn ++y + + +t+e +f++ltk++SW ++g+++ + ++ +++e+ e ++ +++++ere+iGl+a
sp|Q12383|TRM13_YEAST 355 GDYVNrsyvtslvEKYrAHGSILTYEtFFRVLTKLCSWGTCGRKPGT---------AITDIVNVVESFEGAEPYTITIKERENIGLMA 433
*****8887777766623333578888*****************443.........33455678888999999*************** PP
TRM13 224 krlidegRllalkek..gfeaelvkYvekevslEnvlLla 261
+r+idegRl ++kek +f+ael+ Yve++vslEnv++l+
sp|Q12383|TRM13_YEAST 434 RRVIDEGRLVYVKEKftEFNAELIRYVESDVSLENVAMLV 473
***************99********************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 512 (0.0846421); expected 121.0 (0.02)
Passed bias filter: 213 (0.0352124); expected 121.0 (0.02)
Passed Vit filter: 13 (0.00214912); expected 6.0 (0.001)
Passed Fwd filter: 2 (0.000330633); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.03
# Mc/sec: 25644.24
//
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