# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TRM13.hmm.txt # target sequence database: proteomes/Saccharomyces_cerevisiae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TRM13 [M=262] Accession: PF05206.13 Description: Methyltransferase TRM13 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-75 251.6 0.0 4.7e-75 250.9 0.0 1.3 1 sp|Q12383|TRM13_YEAST tRNA:m(4)X modification enzyme TRM13 O Domain annotation for each sequence (and alignments): >> sp|Q12383|TRM13_YEAST tRNA:m(4)X modification enzyme TRM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 250.9 0.0 7.8e-79 4.7e-75 1 261 [. 179 473 .. 179 474 .. 0.91 Alignments for each domain: == domain 1 score: 250.9 bits; conditional E-value: 7.8e-79 TRM13 1 lqqsslignleelkll..ekssayvEfGaGkgelsryvnqaleed.........kkenskyvLidrasnrlkaDrklrkdese..... 72 +qqssli+nl +++ + +s +++EfG+G++e+sryv l ++ ++ +++vLidra+nr+k+D+k+++d se sp|Q12383|TRM13_YEAST 179 VQQSSLIENLVDAGAFerPESLNFIEFGCGRAEFSRYVSLYLLTQltslpaehsGSNSNEFVLIDRATNRMKFDKKIKDDFSEiksns 266 69**************4445679*****************9999999****99888899*********************9999**** PP TRM13 73 .......laikRlkidIkdLnlsaleele..kkkkvvavsKHLCGaATDLtLrcllnsekask......kakleglliAlCChhvCsw 145 + ikR+kidI+dL+++ +++ + ++ ++v +sKHLCG+ATDLtLrc+ ns+ + + kl++++iA+CC+hvC++ sp|Q12383|TRM13_YEAST 267 pskpiscPSIKRIKIDIRDLKMDPILKSTpgDDIQYVCISKHLCGVATDLTLRCIGNSSILHGddnngcNPKLKAICIAMCCRHVCDY 354 *************************997789999**********************9987766788999******************* PP TRM13 146 keyvn........key.leelgitke.efqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeekksklsseereeiGlka 223 +yvn ++y + + +t+e +f++ltk++SW ++g+++ + ++ +++e+ e ++ +++++ere+iGl+a sp|Q12383|TRM13_YEAST 355 GDYVNrsyvtslvEKYrAHGSILTYEtFFRVLTKLCSWGTCGRKPGT---------AITDIVNVVESFEGAEPYTITIKERENIGLMA 433 *****8887777766623333578888*****************443.........33455678888999999*************** PP TRM13 224 krlidegRllalkek..gfeaelvkYvekevslEnvlLla 261 +r+idegRl ++kek +f+ael+ Yve++vslEnv++l+ sp|Q12383|TRM13_YEAST 434 RRVIDEGRLVYVKEKftEFNAELIRYVESDVSLENVAMLV 473 ***************99********************987 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (262 nodes) Target sequences: 6049 (2936363 residues searched) Passed MSV filter: 512 (0.0846421); expected 121.0 (0.02) Passed bias filter: 213 (0.0352124); expected 121.0 (0.02) Passed Vit filter: 13 (0.00214912); expected 6.0 (0.001) Passed Fwd filter: 2 (0.000330633); expected 0.1 (1e-05) Initial search space (Z): 6049 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.03 # Mc/sec: 25644.24 // [ok]