# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TRM13.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TRM13 [M=262]
Accession: PF05206.13
Description: Methyltransferase TRM13
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-78 264.1 0.4 3.6e-35 122.4 0.0 3.2 3 tr|W4ZD26|W4ZD26_STRPU Uncharacterized protein OS=Strongyloc
7.9e-77 259.0 0.7 1.5e-37 130.2 0.5 3.2 2 tr|W4ZJ10|W4ZJ10_STRPU Uncharacterized protein OS=Strongyloc
5.3e-05 23.6 0.3 0.0052 17.0 0.1 2.6 2 tr|W4ZJM6|W4ZJM6_STRPU Uncharacterized protein OS=Strongyloc
------ inclusion threshold ------
0.11 12.6 3.5 0.13 12.4 3.5 1.1 1 tr|W4YHC2|W4YHC2_STRPU Uncharacterized protein OS=Strongyloc
0.24 11.5 0.0 0.39 10.9 0.0 1.2 1 tr|W4YSH5|W4YSH5_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4ZD26|W4ZD26_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.4 0.0 6.3e-39 3.6e-35 2 131 .. 157 284 .. 156 291 .. 0.91
2 ! 77.3 0.1 3.7e-25 2.1e-21 126 214 .. 388 473 .. 366 484 .. 0.82
3 ! 61.1 0.0 3.2e-20 1.8e-16 183 262 .] 492 573 .. 478 573 .. 0.76
Alignments for each domain:
== domain 1 score: 122.4 bits; conditional E-value: 6.3e-39
TRM13 2 qqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnls 88
q sl+g++++l+ll++++++vEfGaG+g+ls++++qa+ + e+++++L+dra r+k D+ ++d+ ++R+ +dI++L l
tr|W4ZD26|W4ZD26_STRPU 157 QLDSLLGHMNRLDLLQPDTCFVEFGAGRGRLSQWIQQAMGN--LEQTSFLLVDRAAVRHKRDTFYQRDDG--GYERISMDIENLILG 239
778************************************54..59************************7..9************** PP
TRM13 89 aleele..kkkkvvavsKHLCGaATDLtLrcllnsekaskkakle 131
+++++ +++vva KHLCGaATDL+Lrcl+++++ + + +
tr|W4ZD26|W4ZD26_STRPU 240 KVPNVCnhGNRPVVAYTKHLCGAATDLALRCLMETRTGNIPQASS 284
***98778999***********************99876655555 PP
== domain 2 score: 77.3 bits; conditional E-value: 3.7e-25
TRM13 126 kkakleglliAlCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeekkskls 212
++ ++g+++AlCChh+Csw++ v+k+++++ gi++++f +l++m+SWa++g+r +++ k+e++keek +e++++ +k+++l+
tr|W4ZD26|W4ZD26_STRPU 388 TTIPVKGVVMALCCHHRCSWRTHVGKQFFQDVGISERDFMALVRMSSWATCGTR---LAKDGDKDENKKEEKGKEDGKDGKKMEGLT 471
36789*************************************************...455555667777777777788888888887 PP
TRM13 213 se 214
tr|W4ZD26|W4ZD26_STRPU 472 DD 473
55 PP
== domain 3 score: 61.1 bits; conditional E-value: 3.2e-20
TRM13 183 aeeedekeekekeekkeeeeseee..kksklsseereeiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLlak 262
+e++++ +e+ + e+++ e++++ +ls+ ereeiG+k+kr++d+gR+ +l++ g++a+lv Yve+++s+Env+L+ak
tr|W4ZD26|W4ZD26_STRPU 492 MERSKKGKERVEGENSDIPEEQASvvGSLGLSVPEREEIGFKCKRILDMGRIIYLRNLGLDAKLVSYVERNISPENVVLIAK 573
3444444455555554444444440045689************************************************985 PP
>> tr|W4ZJ10|W4ZJ10_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.3 0.0 6.7e-39 3.8e-35 2 126 .. 42 164 .. 41 203 .. 0.93
2 ! 130.2 0.5 2.7e-41 1.5e-37 126 262 .] 304 489 .. 287 489 .. 0.87
Alignments for each domain:
== domain 1 score: 122.3 bits; conditional E-value: 6.7e-39
TRM13 2 qqsslignleelkllekssayvEfGaGkgelsryvnqaleedkkenskyvLidrasnrlkaDrklrkdeselaikRlkidIkdLnls 88
q sl+g++++l+ll++++++vEfGaG+g+ls++++qa+ + e+++++L+dra r+k D+ ++d+ ++R+ +dI++L l
tr|W4ZJ10|W4ZJ10_STRPU 42 QLDSLLGHMNRLDLLQPDTCFVEFGAGRGRLSQWIQQAMG--SLEQTSFLLVDRAAVRHKRDTFYQRDDG--GYERISMDIENLILG 124
778************************************5..4699***********************7..9************** PP
TRM13 89 aleele..kkkkvvavsKHLCGaATDLtLrcllnsekask 126
+++++ +++vva KHLCGaATDL+Lrcl+++++ ++
tr|W4ZJ10|W4ZJ10_STRPU 125 KVPNVCnhGNRPVVAYTKHLCGAATDLALRCLMETRTGNE 164
***98778999**********************9988754 PP
== domain 2 score: 130.2 bits; conditional E-value: 2.7e-41
TRM13 126 kkakleglliAlCChhvCswkeyvnkeyleelgitkeefqiltkmvSWavsgkrkse.............................. 182
++ ++g+++AlCChh+Csw++ v+k+++++ gi+++ef +l++m+SWa++g+r +
tr|W4ZJ10|W4ZJ10_STRPU 304 TNIPVKGVVMALCCHHRCSWRTHVGKQFFQDVGISDREFMALVRMSSWATCGTRLVKdggkdqnkkevkgkadekdgvkverltddk 390
46789*************************************************87799**************************** PP
TRM13 183 ...................aeeedekeekekeekkeeeeseeekksklsseereeiGlkakrlidegRllalkekgfeaelvkYvek 250
+++ +++ + ++++ +ee+++ +ls+ ereeiG+k+kr++d++R+ +l++ g++a+lv Yve+
tr|W4ZJ10|W4ZJ10_STRPU 391 deggiketqkgagteelveRNKKGKESLEGENSDIHEEQASVVSSLGLSVPEREEIGFKCKRILDMARIVYLRNLGLDAKLVAYVER 477
*************999864333333333334444455555555666899************************************** PP
TRM13 251 evslEnvlLlak 262
++s+Env+L+ak
tr|W4ZJ10|W4ZJ10_STRPU 478 NISPENVVLIAK 489
*********985 PP
>> tr|W4ZJM6|W4ZJM6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.1 9.1e-07 0.0052 73 165 .. 780 873 .. 771 890 .. 0.76
2 ! 3.8 0.0 0.0095 55 218 260 .. 892 934 .. 887 936 .. 0.93
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 9.1e-07
TRM13 73 laikRlkidIkdLnlsaleelekkkkv......vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCCh...hvCswkeyvn 150
+kR ++ L l++++ ++ + ++vs H CG+ATD+ L ++++ ++ ++ CC h ++ +y
tr|W4ZJM6|W4ZJM6_STRPU 780 ESLKRALGRVQTLGLQNVTLYLSNIDYfygqfdIGVSLHACGVATDIVLSKCVEQGAS--------FVSSPCCYgslHNTHHLTYPR 858
4778888888888888887744444445677779***************999988774........677888864458888888888 PP
TRM13 151 keyleelgitkeefq 165
+++++e++i+k+++
tr|W4ZJM6|W4ZJM6_STRPU 859 SKVFRESNISKKNYF 873
999999999998554 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.0095
TRM13 218 eiGlkakrlidegRllalkekgfeaelvkYvekevslEnvlLl 260
+ G+++ id R++ +e g+++ + +++ s+ n lL+
tr|W4ZJM6|W4ZJM6_STRPU 892 KQGKRCMGYIDRDRAELAREYGYHVTICSLKPETCSPKNNLLI 934
66999***********************************998 PP
>> tr|W4YHC2|W4YHC2_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 3.5 2.2e-05 0.13 157 207 .. 54 104 .. 40 106 .] 0.69
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 2.2e-05
TRM13 157 lgitke.efqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeek 207
++i+++ f+ ++ W ++g++k+ ++++++kee+e+ee++eeee+ee k
tr|W4YHC2|W4YHC2_STRPU 54 TDIKQRsTFHDMQIKIGWILEGSNKKMKKKKKTKEEEEEEEEEEEEEEEE-K 104
57788779****************77666655555555544444444333.3 PP
>> tr|W4YSH5|W4YSH5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 6.8e-05 0.39 133 183 .. 225 289 .. 213 315 .. 0.76
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 6.8e-05
TRM13 133 lliAlCChhv.Cswkeyvn....keyleelgitkeefqiltkmvSWavsgkrkse.........a 183
+ +A+CC + +s+ +++ ++l e+g ++++++i++k+ SW +g + s+ +
tr|W4YSH5|W4YSH5_STRPU 225 IFVAVCCIPAaSSVLTFLLmpesPKFLLEQGNEEKSLEIMKKIYSWNHKGVKASDypidylvpsS 289
789****866155667776788899**********************999997777776654321 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (262 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 2291 (0.0801217); expected 571.9 (0.02)
Passed bias filter: 904 (0.031615); expected 571.9 (0.02)
Passed Vit filter: 107 (0.00374204); expected 28.6 (0.001)
Passed Fwd filter: 15 (0.000524586); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.45u 0.01s 00:00:00.46 Elapsed: 00:00:00.15
# Mc/sec: 24918.02
//
[ok]