# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-56 190.3 0.2 1.2e-55 189.5 0.2 1.4 1 tr|A0A1X7TUC4|A0A1X7TUC4_AMPQE Uncharacterized protein OS=Amphi
3.1e-46 158.7 0.2 4.1e-46 158.3 0.2 1.2 1 tr|A0A1X7SNK0|A0A1X7SNK0_AMPQE Uncharacterized protein OS=Amphi
1.4e-45 156.5 0.2 2.3e-45 155.8 0.2 1.3 1 tr|A0A1X7SHB6|A0A1X7SHB6_AMPQE Uncharacterized protein OS=Amphi
0.0033 18.0 0.7 0.0037 17.9 0.1 1.4 2 tr|A0A1X7SV75|A0A1X7SV75_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.092 13.3 0.2 0.13 12.9 0.2 1.1 1 tr|A0A1X7THP1|A0A1X7THP1_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7TUC4|A0A1X7TUC4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 189.5 0.2 1.3e-59 1.2e-55 3 213 .. 185 369 .. 183 370 .. 0.91
Alignments for each domain:
== domain 1 score: 189.5 bits; conditional E-value: 1.3e-59
HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEE CS
TYW3 3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfv 81
K+++Le+ +d+s+kGs+D++++el++ in++ed++TtSSCsGR+ vf ++++++gk +g+ wl+
tr|A0A1X7TUC4|A0A1X7TUC4_AMPQE 185 KKRVLEDK----EDASRKGSIDAPVIELVKYINKQEDYYTTSSCSGRIIVF-----------SENTQTGK-EGTLWLLT 247
67777774....9**************************************...........34455555.5568**** PP
ESS---HHHHHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTE CS
TYW3 82 sHdpvkeeellaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkk 160
sH++v+ +++l+ l++ + + + ++kfeP++Lhv cr+lehAq++l++A+s+Gf++SGi kk+k
tr|A0A1X7TUC4|A0A1X7TUC4_AMPQE 248 SHETVSIDNVLSILKDRDIPI-----------SCYTYYKFEPFVLHVSCRTLEHAQAILRIAVSSGFKNSGISVSKKNK 315
*************99997433...........799******************************************** PP
EEEEEE---EEEEEEE.SSTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 161 vivairsglklevpig.rkkllvseeylkllvklanerfeenkkrierfeealk 213
+i+ +rs+ l++p++ ++kl+v+e+yl lvk++ne++e+n +rierf++ ++
tr|A0A1X7TUC4|A0A1X7TUC4_AMPQE 316 MILSVRSTQTLQSPVAfDGKLIVTEQYLCHLVKISNEKLEDNFQRIERFYKLVR 369
****************8667******************************8765 PP
>> tr|A0A1X7SNK0|A0A1X7SNK0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 158.3 0.2 4.8e-50 4.1e-46 3 184 .. 13 168 .. 11 169 .] 0.90
Alignments for each domain:
== domain 1 score: 158.3 bits; conditional E-value: 4.8e-50
HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEE CS
TYW3 3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfv 81
K+++Le+ +d+s+kGs+D++i+el++ in++ed++TtSSCsGR+ vf ++++++gk +g+ wl+
tr|A0A1X7SNK0|A0A1X7SNK0_AMPQE 13 KRRVLEDK----EDASRKGSIDAPIIELVKYINKQEDYYTTSSCSGRIIVF-----------SENTRTGK-EGTLWLLT 75
66777764....9**************************************...........35566666.5568**** PP
ESS---HHHHHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTE CS
TYW3 82 sHdpvkeeellaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkk 160
sH++v+ +++l+ l++++ + + ++kfeP++Lhv cr+lehAq++l++A+s+Gf++SGi kk+k
tr|A0A1X7SNK0|A0A1X7SNK0_AMPQE 76 SHETVSIDNVLSVLKDKDIPI-----------SCYTYYKFEPFVLHVSCRTLEHAQAILRIAISSGFKNSGISVSKKNK 143
***************997433...........799******************************************** PP
EEEEEE---EEEEEEE.SSTS---H CS
TYW3 161 vivairsglklevpig.rkkllvse 184
+i+ +rs+ l++p++ ++kl+v e
tr|A0A1X7SNK0|A0A1X7SNK0_AMPQE 144 IILSVRSTQTLQSPVAfDGKLIVAE 168
****************865688876 PP
>> tr|A0A1X7SHB6|A0A1X7SHB6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 155.8 0.2 2.6e-49 2.3e-45 3 184 .. 48 203 .. 46 204 .] 0.89
Alignments for each domain:
== domain 1 score: 155.8 bits; conditional E-value: 2.6e-49
HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEE CS
TYW3 3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfv 81
K+++Le+ +d+s+kGs+D++i+el++ ins+ed++TtSSCsGR+ vf +++ + k+g+ wl+
tr|A0A1X7SHB6|A0A1X7SHB6_AMPQE 48 KKRVLEDK----EDASRKGSIDAPIIELVKYINSQEDYYTTSSCSGRIIVF------------SENIQTGKEGTLWLLT 110
77777774....9**************************************............334444446668**** PP
ESS---HHHHHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTE CS
TYW3 82 sHdpvkeeellaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkk 160
sH++v+ +++l+ l++ + + + ++kfeP++Lhv cr+lehAq++l++A+s+Gf++SGi kk+k
tr|A0A1X7SHB6|A0A1X7SHB6_AMPQE 111 SHETVSIDNVLSVLKDRDIPI-----------SCYTYYKFEPFVLHVSCRTLEHAQAILRIAVSSGFKNSGISVSKKNK 178
**************9997433...........799******************************************** PP
EEEEEE---EEEEEEE.SSTS---H CS
TYW3 161 vivairsglklevpig.rkkllvse 184
+i+ +rs+ l++p++ ++kl+v e
tr|A0A1X7SHB6|A0A1X7SHB6_AMPQE 179 IILSVRSTQTLQSPVAfDGKLIVAE 203
****************865688876 PP
>> tr|A0A1X7SV75|A0A1X7SV75_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.1 4.3e-07 0.0037 186 213 .. 1 28 [. 1 29 [. 0.92
2 ? -2.8 0.0 0.93 8.1e+03 18 20 .. 56 58 .. 43 72 .. 0.50
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 4.3e-07
HHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 186 ylkllvklanerfeenkkrierfeealk 213
yl lvk++ne++e+n +rierf++ ++
tr|A0A1X7SV75|A0A1X7SV75_AMPQE 1 YLCHLVKISNEKLEDNFQRIERFYKLVR 28
8999********************9775 PP
== domain 2 score: -2.8 bits; conditional E-value: 0.93
HHC CS
TYW3 18 spk 20
++k
tr|A0A1X7SV75|A0A1X7SV75_AMPQE 56 KKK 58
111 PP
>> tr|A0A1X7THP1|A0A1X7THP1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.2 1.5e-05 0.13 59 98 .. 8 47 .. 3 51 .. 0.88
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 1.5e-05
.......EESSTT-STT-EEEEEESS---HHHHHHHHCS- CS
TYW3 59 saeaeekaaksggkkgggkwlfvsHdpvkeeellaelegl 98
+++++k++k+++k+++g+++ vsH+ +++++la+l++
tr|A0A1X7THP1|A0A1X7THP1_AMPQE 8 GKTEKAKEEKTKEKEESGSIVNVSHHITNRKSTLAKLFNF 47
566788999999999********************99986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1567 (0.0360769); expected 868.7 (0.02)
Passed bias filter: 889 (0.0204674); expected 868.7 (0.02)
Passed Vit filter: 80 (0.00184183); expected 43.4 (0.001)
Passed Fwd filter: 5 (0.000115115); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.24u 0.01s 00:00:00.25 Elapsed: 00:00:00.10
# Mc/sec: 31493.57
//
[ok]