# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-59 199.4 0.0 7.6e-59 198.7 0.0 1.3 1 tr|H9GHH2|H9GHH2_ANOCA tRNA-yW synthesizing protein 3 homolo
0.0008 18.9 36.6 2.4 7.5 0.2 9.3 10 tr|H9GH12|H9GH12_ANOCA Uncharacterized protein OS=Anolis car
------ inclusion threshold ------
4.2 6.7 9.5 0.37 10.1 4.6 1.7 2 tr|G1KTW8|G1KTW8_ANOCA General transcription factor IIA subu
Domain annotation for each sequence (and alignments):
>> tr|H9GHH2|H9GHH2_ANOCA tRNA-yW synthesizing protein 3 homolog OS=Anolis carolinensis OX=28377 GN=TYW3 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 198.7 0.0 1.2e-62 7.6e-59 13 213 .. 13 201 .. 6 202 .. 0.91
Alignments for each domain:
== domain 1 score: 198.7 bits; conditional E-value: 1.2e-62
..HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE...............EESSTT-STT-EEEEEESS---HHHHHHHHC CS
TYW3 13 pdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrk...saeaeekaaksggkkgggkwlfvsHdpvkeeellaele 96
++ d s+kGsvDe+i l++++n +e+++TtSSCsGRv+v+ + + ++++ + +k++++wl+v+H+ ++ e++l++l+
tr|H9GHH2|H9GHH2_ANOCA 13 SRADGSRKGSVDEPIEGLVRLLNGREGFCTTSSCSGRVVVLEQP-PqprPPPRGQATTGFEVQKQNCTWLMVTHQICTIEDVLTALQ 98
33799************************************333.2465344677778888899*********************** PP
S--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S-- CS
TYW3 97 gleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.llv 182
+ + + vfkfeP++Lhv+cr+l++Aq l+++A++aGfr+SGi+ +k+k+i+a+rs+++levp+++k l+v
tr|H9GHH2|H9GHH2_ANOCA 99 KAK---------------EDAVFKFEPFVLHVQCRELQDAQLLHTVAIEAGFRNSGITVGRKGKIIMAVRSTHCLEVPLSQKGkLMV 170
*95...............5789**********************************************************6555*** PP
-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 183 seeylkllvklanerfeenkkrierfeealk 213
seey++++v++an+++een++ri+rf+++l+
tr|H9GHH2|H9GHH2_ANOCA 171 SEEYVDFVVRVANQKMEENRRRIDRFYSSLQ 201
***************************9996 PP
>> tr|H9GH12|H9GH12_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.8 0.2 0.13 8e+02 46 59 .. 38 73 .. 36 123 .. 0.68
2 ! 6.7 0.4 0.00067 4.1 42 59 .. 137 162 .. 130 234 .. 0.66
3 ? 2.7 0.2 0.012 72 46 59 .. 248 266 .. 247 315 .. 0.73
4 ? -2.0 0.1 0.3 1.9e+03 46 54 .. 383 391 .. 381 424 .. 0.78
5 ! 5.2 0.1 0.0019 12 43 54 .. 486 497 .. 464 544 .. 0.80
6 ! 3.3 0.1 0.0072 45 44 54 .. 592 602 .. 586 634 .. 0.83
7 ? 1.0 0.0 0.036 2.2e+02 45 55 .. 696 706 .. 688 751 .. 0.78
8 ! 7.5 0.2 0.00038 2.4 40 59 .. 931 958 .. 921 1026 .. 0.65
9 ! 5.3 0.1 0.0018 11 43 58 .. 1039 1054 .. 1027 1117 .. 0.84
10 ! 6.8 0.2 0.00062 3.9 42 56 .. 1155 1169 .. 1144 1242 .. 0.73
Alignments for each domain:
== domain 1 score: -0.8 bits; conditional E-value: 0.13
ES-EEEEE............................ CS
TYW3 46 CsGRvsvflegrk......................s 59
CsGRv ++l+g
tr|H9GH12|H9GH12_ANOCA 38 CSGRVEMLLNGLWgtvcddgwdlsdaqvvcrelgcG 73
********9887666666666665555555555443 PP
== domain 2 score: 6.7 bits; conditional E-value: 0.00067
EEEEES-EEEEE................ CS
TYW3 42 TtSSCsGRvsvflegrk..........s 59
tS CsGRv vf + +
tr|H9GH12|H9GH12_ANOCA 137 GTSPCSGRVEVFHN--DawgticdagwD 162
69**********32..124555555551 PP
== domain 3 score: 2.7 bits; conditional E-value: 0.012
ES-EEEEE........... CS
TYW3 46 CsGRvsvflegrk.....s 59
CsGRv vf+ g+ +
tr|H9GH12|H9GH12_ANOCA 248 CSGRVEVFISGEWtsvcdD 266
********99876555540 PP
== domain 4 score: -2.0 bits; conditional E-value: 0.3
ES-EEEEE. CS
TYW3 46 CsGRvsvfl 54
C GRv vf
tr|H9GH12|H9GH12_ANOCA 383 CTGRVEVFH 391
********3 PP
== domain 5 score: 5.2 bits; conditional E-value: 0.0019
EEEES-EEEEE. CS
TYW3 43 tSSCsGRvsvfl 54
+S CsGRv vf
tr|H9GH12|H9GH12_ANOCA 486 SSNCSGRVEVFH 497
688********3 PP
== domain 6 score: 3.3 bits; conditional E-value: 0.0072
EEES-EEEEE. CS
TYW3 44 SSCsGRvsvfl 54
S CsGR+ vf
tr|H9GH12|H9GH12_ANOCA 592 SRCSGRIEVFQ 602
88********3 PP
== domain 7 score: 1.0 bits; conditional E-value: 0.036
EES-EEEEE.. CS
TYW3 45 SCsGRvsvfle 55
CsGRv +f +
tr|H9GH12|H9GH12_ANOCA 696 RCSGRVELFHN 706
6********32 PP
== domain 8 score: 7.5 bits; conditional E-value: 0.00038
EEEEEEES-EEEEE.............. CS
TYW3 40 lvTtSSCsGRvsvflegrk........s 59
l tS CsGRv vf + + +
tr|H9GH12|H9GH12_ANOCA 931 LNGTSPCSGRVEVFHNDTWgticdagwD 958
5679**********43322555555551 PP
== domain 9 score: 5.3 bits; conditional E-value: 0.0018
EEEES-EEEEE..... CS
TYW3 43 tSSCsGRvsvflegrk 58
t CsGRv vfl+g+
tr|H9GH12|H9GH12_ANOCA 1039 TNGCSGRVEVFLNGEW 1054
667*********9986 PP
== domain 10 score: 6.8 bits; conditional E-value: 0.00062
EEEEES-EEEEE... CS
TYW3 42 TtSSCsGRvsvfleg 56
tS CsGRv vf +
tr|H9GH12|H9GH12_ANOCA 1155 GTSPCSGRVEVFHND 1169
69**********432 PP
>> tr|G1KTW8|G1KTW8_ANOCA General transcription factor IIA subunit 1 OS=Anolis carolinensis OX=28377 GN=GTF2A1 PE=4 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.1 4.6 6e-05 0.37 69 184 .. 68 193 .. 26 200 .. 0.66
2 ? -2.1 0.2 0.33 2e+03 61 97 .. 296 332 .. 257 359 .. 0.68
Alignments for each domain:
== domain 1 score: 10.1 bits; conditional E-value: 6e-05
STT-STT-EEEEEESS---HHHHHHHHCS--.......................SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHC CS
TYW3 69 sggkkgggkwlfvsHdpvkeeellaelegleeeeesaksseseee.........erlivfkfePmILhvlcrslehAqkllsaAlsa 146
+++++++ + + ++H+ ++++++ ++ ++++++ +++++++ ++ v ++ +h ++ +++A++ ++Al a
tr|G1KTW8|G1KTW8_ANOCA 68 AQQQQQQQQQHHQQHQHHPPQQHVHHHHHPPQQQQQTVQQSQAQQvlipatqqaPQQQVIVPDSKLMHMNTSGMSAAATAATLALPA 154
22222333444555555544555555544444444444444444355666666655555667999********************** PP
T-TT-EEEEECTTEEEEEEE---EEEEEEE.SSTS---H CS
TYW3 147 GfreSGivslkkkkvivairsglklevpig.rkkllvse 184
G + +++++++ +r+ + + +i +++++ ++
tr|G1KTW8|G1KTW8_ANOCA 155 GVTPVQQILTNSGQILQVVRAANGAQYIIQpQQQVVLQQ 193
*99888888888788888889888888888543455554 PP
== domain 2 score: -2.1 bits; conditional E-value: 0.33
.....EESSTT-STT-EEEEEESS---HHHHHHHHCS CS
TYW3 61 eaeekaaksggkkgggkwlfvsHdpvkeeellaeleg 97
e +++++++++k gg+ v+ +p+++e+ ++ eg
tr|G1KTW8|G1KTW8_ANOCA 296 EDYDDDEEEDKEKDGGEDGQVEEEPLNSEDDVSDEEG 332
3334444555555566666666666666666555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 18528 (9796552 residues searched)
Passed MSV filter: 755 (0.0407491); expected 370.6 (0.02)
Passed bias filter: 394 (0.0212651); expected 370.6 (0.02)
Passed Vit filter: 26 (0.00140328); expected 18.5 (0.001)
Passed Fwd filter: 6 (0.000323834); expected 0.2 (1e-05)
Initial search space (Z): 18528 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.07
# Mc/sec: 29949.46
//
[ok]