# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-48 166.2 0.5 4.7e-30 105.2 0.0 2.0 2 tr|C3ZRL5|C3ZRL5_BRAFL Uncharacterized protein OS=Branchiost
Domain annotation for each sequence (and alignments):
>> tr|C3ZRL5|C3ZRL5_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_89765 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.6 0.1 1.4e-20 4e-16 3 55 .. 13 60 .. 11 66 .. 0.89
2 ! 105.2 0.0 1.7e-34 4.7e-30 114 208 .. 68 163 .. 60 167 .. 0.94
Alignments for each domain:
== domain 1 score: 59.6 bits; conditional E-value: 1.4e-20
HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE.. CS
TYW3 3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvfle 55
K+++L+ d+s+kGs+De+i+el++ in +e l+TtSSCsGR+svf e
tr|C3ZRL5|C3ZRL5_BRAFL 13 KKQCLSA-----SDLSRKGSIDEPIVELVNFINGQEFLFTTSSCSGRISVFAE 60
5555555.....7**************************************76 PP
== domain 2 score: 105.2 bits; conditional E-value: 1.7e-34
SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEE.SSTS---HHHHHHHHHHHHHHHH CS
TYW3 114 erlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpig.rkkllvseeylkllvklanerfe 199
++ vfkfeP++Lh +cr++++A+ +++aA++aGfr+SGi +++kv+vairs++ le p++ r+++lv+e+y+++lv+ an+++e
tr|C3ZRL5|C3ZRL5_BRAFL 68 TGSAVFKFEPFVLHAQCRTTQDARLMHQAAVQAGFRNSGISLGNRGKVVVAIRSTHTLEAPLSdRGRMLVDEDYIRYLVTAANSKLE 154
67789**********************************************************7556******************** PP
HHHHHHHHH CS
TYW3 200 enkkrierf 208
en+++++r
tr|C3ZRL5|C3ZRL5_BRAFL 155 ENERKVQRC 163
******995 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 962 (0.0337047); expected 570.8 (0.02)
Passed bias filter: 518 (0.0181487); expected 570.8 (0.02)
Passed Vit filter: 25 (0.000875902); expected 28.5 (0.001)
Passed Fwd filter: 1 (3.50361e-05); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09
# Mc/sec: 31501.01
//
[ok]