# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      1e-48  166.2   0.5    4.7e-30  105.2   0.0    2.0  2  tr|C3ZRL5|C3ZRL5_BRAFL  Uncharacterized protein OS=Branchiost


Domain annotation for each sequence (and alignments):
>> tr|C3ZRL5|C3ZRL5_BRAFL  Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_89765 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   1.4e-20     4e-16       3      55 ..      13      60 ..      11      66 .. 0.89
   2 !  105.2   0.0   1.7e-34   4.7e-30     114     208 ..      68     163 ..      60     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.4e-20
                            HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE.. CS
                    TYW3  3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvfle 55
                            K+++L+       d+s+kGs+De+i+el++ in +e l+TtSSCsGR+svf e
  tr|C3ZRL5|C3ZRL5_BRAFL 13 KKQCLSA-----SDLSRKGSIDEPIVELVNFINGQEFLFTTSSCSGRISVFAE 60
                            5555555.....7**************************************76 PP

  == domain 2  score: 105.2 bits;  conditional E-value: 1.7e-34
                             SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEE.SSTS---HHHHHHHHHHHHHHHH CS
                    TYW3 114 erlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpig.rkkllvseeylkllvklanerfe 199
                             ++  vfkfeP++Lh +cr++++A+ +++aA++aGfr+SGi   +++kv+vairs++ le p++ r+++lv+e+y+++lv+ an+++e
  tr|C3ZRL5|C3ZRL5_BRAFL  68 TGSAVFKFEPFVLHAQCRTTQDARLMHQAAVQAGFRNSGISLGNRGKVVVAIRSTHTLEAPLSdRGRMLVDEDYIRYLVTAANSKLE 154
                             67789**********************************************************7556******************** PP

                             HHHHHHHHH CS
                    TYW3 200 enkkrierf 208
                             en+++++r 
  tr|C3ZRL5|C3ZRL5_BRAFL 155 ENERKVQRC 163
                             ******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        28542  (13248087 residues searched)
Passed MSV filter:                       962  (0.0337047); expected 570.8 (0.02)
Passed bias filter:                      518  (0.0181487); expected 570.8 (0.02)
Passed Vit filter:                        25  (0.000875902); expected 28.5 (0.001)
Passed Fwd filter:                         1  (3.50361e-05); expected 0.3 (1e-05)
Initial search space (Z):              28542  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09
# Mc/sec: 31501.01
//
[ok]