# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.14   11.6   0.0    1.2  1  tr|Q95QK1|Q95QK1_CAEEL  Uncharacterized protein OS=Caenorhabd


Domain annotation for each sequence (and alignments):
>> tr|Q95QK1|Q95QK1_CAEEL  Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F20D12.7 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-06      0.14     137     206 ..      59     139 ..       5     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7e-06
                             HHHHHHHHHCT-TT-EEEEECTT.............EEEEEEE---EEEEEEESSTS---HHHHHHHHHHHHHHHHHHHHHHH CS
                    TYW3 137 qkllsaAlsaGfreSGivslkkk.............kvivairsglklevpigrkkllvseeylkllvklanerfeenkkrie 206
                             +++++aA++  fr  Gi+  +++               +v i++g ++  ++g+  +   +   k+l +   ++f++ ++ri+
  tr|Q95QK1|Q95QK1_CAEEL  59 KDVIKAAVDQKFRDAGIKVNSTDgsdeeeeitepssVLLVMITMGGRMANVVGT--MKLYKGLGKYLSDRKRKKFQSTTERIQ 139
                             6899**************988879**********988899999**********8..778888888899999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        20008  (8229220 residues searched)
Passed MSV filter:                       795  (0.0397341); expected 400.2 (0.02)
Passed bias filter:                      429  (0.0214414); expected 400.2 (0.02)
Passed Vit filter:                        32  (0.00159936); expected 20.0 (0.001)
Passed Fwd filter:                         1  (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z):              20008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.07
# Mc/sec: 25157.90
//
[ok]