# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
  ------ inclusion threshold ------
      0.055   12.7   0.0      0.059   12.6   0.0    1.0  1  tr|F6Y6V9|F6Y6V9_CIOIN  Uncharacterized protein OS=Ciona inte


Domain annotation for each sequence (and alignments):
>> tr|F6Y6V9|F6Y6V9_CIOIN  Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-06     0.059     125     177 ..      31      85 ..       6     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-06
                             EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTT...EEEEEEE---EEEEEEES CS
                    TYW3 125 ILhvlcrslehAqkllsaAlsaGfreSGivslkkk...kvivairsglklevpigr 177
                              +hv++ + ++A+++++a ++  f +SG+ s  ++    +iv ++  +kl+  i +
  tr|F6Y6V9|F6Y6V9_CIOIN  31 RVHVQTYDAQQAEDIIKAKSN-VFLKSGVSSFFSGilaMIIVVVTLVIKLSEAITT 85 
                             58**************97666.9********9988888888888899999888873 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        16678  (5370518 residues searched)
Passed MSV filter:                       642  (0.0384938); expected 333.6 (0.02)
Passed bias filter:                      322  (0.0193069); expected 333.6 (0.02)
Passed Vit filter:                        28  (0.00167886); expected 16.7 (0.001)
Passed Fwd filter:                         2  (0.000119918); expected 0.2 (1e-05)
Initial search space (Z):              16678  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.05
# Mc/sec: 22985.82
//
[ok]