# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TYW3.hmm.txt # target sequence database: proteomes/Dictyostelium_discoideum.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TYW3 [M=214] Accession: PF02676.13 Description: Methyltransferase TYW3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (214 nodes) Target sequences: 12739 (6856946 residues searched) Passed MSV filter: 1472 (0.115551); expected 254.8 (0.02) Passed bias filter: 308 (0.0241777); expected 254.8 (0.02) Passed Vit filter: 34 (0.00266897); expected 12.7 (0.001) Passed Fwd filter: 1 (7.84991e-05); expected 0.1 (1e-05) Initial search space (Z): 12739 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.16u 0.00s 00:00:00.16 Elapsed: 00:00:00.06 # Mc/sec: 24456.44 // [ok]