# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Macaca_mulatta.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.5e-43  147.7   0.2    9.1e-23   80.9   0.0    2.3  2  tr|F7GQ32|F7GQ32_MACMU  Uncharacterized protein OS=Macaca mul


Domain annotation for each sequence (and alignments):
>> tr|F7GQ32|F7GQ32_MACMU  Uncharacterized protein OS=Macaca mulatta OX=9544 GN=TYW3 PE=4 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.8e-22   3.9e-18       3      90 ..      11      84 ..       9      86 .. 0.87
   2 !   80.9   0.0   4.3e-27   9.1e-23     138     213 ..      84     160 ..      83     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.8e-22
                            HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHH CS
                    TYW3  3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeee 90
                            Ka++L++      d+s+kGsvD++++el++ +n++++++TtSSC+GR+ ++         +   +  + +k+++ wl+v+H+p+++++
  tr|F7GQ32|F7GQ32_MACMU 11 KAQCLSK-----ADLSRKGSVDKDVVELVQFLNTRDQFFTTSSCAGRILLL---------DGGINGFEVQKQNCGWLLVTHKPCEKDD 84
                            6777776.....6**************************************.........344567777788899*********8876 PP

  == domain 2  score: 80.9 bits;  conditional E-value: 4.3e-27
                             HHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
                    TYW3 138 kllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.llvseeylkllvklanerfeenkkrierfeealk 213
                             +++s+A+++Gfr+SGi+  k++k+++a+rs+++levp+++k  l+v+eey+++l+++an+++eenkkrierf++ l+
  tr|F7GQ32|F7GQ32_MACMU  84 DVHSVAIDSGFRNSGITVGKRGKIMLAVRSTHGLEVPLSHKGkLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLH 160
                             5899***********************************5555******************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        21211  (10888574 residues searched)
Passed MSV filter:                       832  (0.0392249); expected 424.2 (0.02)
Passed bias filter:                      492  (0.0231955); expected 424.2 (0.02)
Passed Vit filter:                        39  (0.00183867); expected 21.2 (0.001)
Passed Fwd filter:                         3  (0.000141436); expected 0.2 (1e-05)
Initial search space (Z):              21211  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 29126.94
//
[ok]