# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-55 187.8 0.4 3e-55 187.1 0.0 1.5 2 tr|F7FNE6|F7FNE6_MONDO tRNA-yW synthesizing protein 3 homolo
------ inclusion threshold ------
0.21 11.1 17.6 1.9 8.0 0.2 5.5 6 tr|F7ENX8|F7ENX8_MONDO Uncharacterized protein OS=Monodelphi
6.6 6.2 6.0 22 4.5 0.1 2.7 3 tr|F6YT70|F6YT70_MONDO Uncharacterized protein OS=Monodelphi
Domain annotation for each sequence (and alignments):
>> tr|F7FNE6|F7FNE6_MONDO tRNA-yW synthesizing protein 3 homolog OS=Monodelphis domestica OX=13616 GN=TYW3 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 187.1 0.0 4.3e-59 3e-55 13 213 .. 36 213 .. 28 214 .. 0.93
2 ? -3.1 0.1 0.69 4.9e+03 80 98 .. 235 253 .. 219 274 .. 0.49
Alignments for each domain:
== domain 1 score: 187.1 bits; conditional E-value: 4.3e-59
..HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHHHHHHHCS-- CS
TYW3 13 pdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeeellaelegle 99
++ d+s++G vDe+++el++++n +e+++T SSC+GR+ ++ + +++ + +k+++ wl+v+H+ ++++++l++l++
tr|F7FNE6|F7FNE6_MONDO 36 SKADLSRQGAVDEDVAELVELLNGQEGFFTRSSCAGRILLL---------DGNTNGYKIQKQNCPWLLVTHQLCTKDDMLSALKKA- 112
347**************************************.........4456788888899*********************99. PP
..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S---HH CS
TYW3 100 eeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.llvsee 185
++ v+kfeP+ILhv+cr+l +Aq l+s+A+++Gfr+SGi+ k++k ++a+rs+++levp+++k l+v+ee
tr|F7FNE6|F7FNE6_MONDO 113 --------------QGDAVLKFEPFILHVQCRQLRDAQVLHSVAIDSGFRNSGITVGKRGKTVLAVRSTHGLEVPLSHKGrLMVTEE 185
..............47889**********************************************************6666****** PP
HHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 186 ylkllvklanerfeenkkrierfeealk 213
y+++l+k+an+++eenkkrierf++ l+
tr|F7FNE6|F7FNE6_MONDO 186 YIDFLLKIANQKMEENKKRIERFYSCLQ 213
************************9886 PP
== domain 2 score: -3.1 bits; conditional E-value: 0.69
EEESS---HHHHHHHHCS- CS
TYW3 80 fvsHdpvkeeellaelegl 98
+ +H+ ++ e + +++
tr|F7FNE6|F7FNE6_MONDO 235 VYTHRRKRKTEKTHGQRSS 253
4444444333333333222 PP
>> tr|F7ENX8|F7ENX8_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=CD163 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.0 0.2 0.00027 1.9 43 56 .. 270 283 .. 268 317 .. 0.76
2 ? -2.4 0.0 0.4 2.9e+03 46 56 .. 485 495 .. 484 510 .. 0.86
3 ? 1.5 0.2 0.027 1.9e+02 30 54 .. 575 599 .. 555 624 .. 0.75
4 ? 1.9 0.1 0.02 1.4e+02 46 58 .. 717 729 .. 700 783 .. 0.84
5 ? 1.4 0.1 0.028 2e+02 43 58 .. 821 836 .. 806 883 .. 0.77
6 ? 6.5 0.2 0.0008 5.7 44 110 .. 925 1013 .. 923 1027 .. 0.74
Alignments for each domain:
== domain 1 score: 8.0 bits; conditional E-value: 0.00027
EEEES-EEEEE... CS
TYW3 43 tSSCsGRvsvfleg 56
tSSCsGRv v ++
tr|F7ENX8|F7ENX8_MONDO 270 TSSCSGRVEVRVQN 283
9********98644 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.4
ES-EEEEE... CS
TYW3 46 CsGRvsvfleg 56
CsGRv v +g
tr|F7ENX8|F7ENX8_MONDO 485 CSGRVEVKHQG 495
*****998655 PP
== domain 3 score: 1.5 bits; conditional E-value: 0.027
HHHHHHC-SSEEEEEEES-EEEEE. CS
TYW3 30 lideinsledlvTtSSCsGRvsvfl 54
++++ + + SSC GRv + +
tr|F7ENX8|F7ENX8_MONDO 575 ICSRYTDFRLVDGNSSCEGRVEIQV 599
55555555555568*******9974 PP
== domain 4 score: 1.9 bits; conditional E-value: 0.02
ES-EEEEE..... CS
TYW3 46 CsGRvsvflegrk 58
C+GRv v+ eg
tr|F7ENX8|F7ENX8_MONDO 717 CAGRVEVYHEGAW 729
********99975 PP
== domain 5 score: 1.4 bits; conditional E-value: 0.028
EEEES-EEEEE..... CS
TYW3 43 tSSCsGRvsvflegrk 58
t C+GR vf +g+
tr|F7ENX8|F7ENX8_MONDO 821 TQACAGRLEVFYNGTW 836
568********99876 PP
== domain 6 score: 6.5 bits; conditional E-value: 0.0008
EEES-EEEEE..................................EESSTT-STT-EEEEEESS---HHHHHHHHCS--....... CS
TYW3 44 SSCsGRvsvflegrk......................saeaeekaaksggkkgggkwlfvsHdpvkeeellaelegleeeeesak 106
S CsGRv v+ eg+ ++ + + + g++ g wl H + +e++l++ ++ ++++ ++
tr|F7ENX8|F7ENX8_MONDO 925 SRCSGRVEVWHEGSWgtvcddswdladakvvcqqlgcGSALGAPGEAAFGRGIGPIWLNNVHCKGNESSLWNCTADHWKQTDCEH 1009
78**********9998999999988888888887777444555555566666666899999999999999988888877666655 PP
.... CS
TYW3 107 sses 110
++++
tr|F7ENX8|F7ENX8_MONDO 1010 KEDA 1013
5554 PP
>> tr|F6YT70|F6YT70_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.2 0.0036 25 46 59 .. 10 27 .. 5 93 .. 0.74
2 ? -1.6 0.1 0.23 1.6e+03 46 57 .. 124 135 .. 120 198 .. 0.75
3 ? 4.5 0.1 0.0031 22 46 59 .. 230 247 .. 220 310 .. 0.75
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.0036
ES-EEEEE.......... CS
TYW3 46 CsGRvsvflegrk....s 59
CsGRv v+ +g+ +
tr|F6YT70|F6YT70_MONDO 10 CSGRVEVYYQGTWgtvcD 27
********9887655551 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.23
ES-EEEEE.... CS
TYW3 46 CsGRvsvflegr 57
C GRv ++ +g
tr|F6YT70|F6YT70_MONDO 124 CLGRVEIYYQGI 135
999999997775 PP
== domain 3 score: 4.5 bits; conditional E-value: 0.0031
ES-EEEEE.......... CS
TYW3 46 CsGRvsvflegrk....s 59
CsGRv v+ +g+ +
tr|F6YT70|F6YT70_MONDO 230 CSGRVEVYYQGTWgtvcD 247
********9887655551 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 933 (0.0438605); expected 425.4 (0.02)
Passed bias filter: 499 (0.0234581); expected 425.4 (0.02)
Passed Vit filter: 38 (0.00178639); expected 21.3 (0.001)
Passed Fwd filter: 3 (0.00014103); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 30137.21
//
[ok]