# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TYW3.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TYW3 [M=214] Accession: PF02676.13 Description: Methyltransferase TYW3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-60 202.1 0.0 4.5e-60 201.7 0.0 1.1 1 tr|A9US70|A9US70_MONBE Predicted protein OS=Monosiga brevico Domain annotation for each sequence (and alignments): >> tr|A9US70|A9US70_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=5697 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 201.7 0.0 4.9e-64 4.5e-60 2 213 .. 14 215 .. 13 216 .. 0.95 Alignments for each domain: == domain 1 score: 201.7 bits; conditional E-value: 4.9e-64 HHHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---H CS TYW3 2 rKakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvke 88 +Ka++Le+L+ + d+s+kG +D++i l++ in+l+d+vTtSSCsGR+++f +++++++k++g+wl+ sHd+v+ tr|A9US70|A9US70_MONBE 14 SKARVLEQLQLC-LDNSKKGALDAPIEALLNFINELDDYVTTSSCSGRIALF------------CEQQDARKRTGTWLLASHDVVTV 87 699******988.***************************************............788999999************** PP HHHHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-T..............T-EEEEECTTEE CS TYW3 89 eellaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfr..............eSGivslkkkkv 161 e+++a++++++ +++ +++++fkfeP++Lhv+cr+le+A+++l++Al++G+r +SG+v k k+ tr|A9US70|A9US70_MONBE 88 EAAAAAYQDERIRDS----------QGPVMFKFEPFVLHVQCRTLERARDFLKTALDCGLRlwmaslcmcapcisNSGLVLGK--KF 162 **********97766..........89*****************************************************977..6* PP EEEEE---EEEEEEE.SSTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS TYW3 162 ivairsglklevpig.rkkllvseeylkllvklanerfeenkkrierfeealk 213 +va+r++lkle+p++ +++ lv+e+y+++lv++an++f+en +ri+rfe+ ++ tr|A9US70|A9US70_MONBE 163 MVAVRTTLKLESPVAyDGQRLVDEAYIACLVQMANDMFAENLQRIARFETGVR 215 ***************7556*****************************98775 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (214 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 353 (0.0384197); expected 183.8 (0.02) Passed bias filter: 207 (0.0225294); expected 183.8 (0.02) Passed Vit filter: 27 (0.00293862); expected 9.2 (0.001) Passed Fwd filter: 1 (0.000108838); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04 # Mc/sec: 29489.00 // [ok]