# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    3.6e-58  196.7   0.1    6.8e-58  195.8   0.1    1.4  1  sp|Q8BSA9|TYW3_MOUSE   tRNA wybutosine-synthesizing protein 3


Domain annotation for each sequence (and alignments):
>> sp|Q8BSA9|TYW3_MOUSE  tRNA wybutosine-synthesizing protein 3 homolog OS=Mus musculus OX=10090 GN=Tyw3 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.1     3e-62   6.8e-58       6     213 ..      14     193 ..       9     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 3e-62
                           HHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHHHHHH CS
                  TYW3   6 iLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeeellae 94 
                            L     ++ d+s+kGsvDe+ +e+++++ns+e+++TtSSC+GR+ ++         + +++ sg +k+++ wl+v+H+p+ +++++a+
  sp|Q8BSA9|TYW3_MOUSE  14 SL-----SKADLSRKGSVDEDAVEVVELLNSREEFFTTSSCAGRILLL---------DGSTEGSGVQKQHCCWLLVTHKPCARDDVMAA 88 
                           33.....447**************************************.........4556799999999******************* PP

                           HCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S-- CS
                  TYW3  95 legleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.llv 182
                           l+g +                  v+kfeP+ILhv+cr+l++Aq+l+s+A+++Gfr+SGi+  k++k ++a+r +++levp+ +k  l+v
  sp|Q8BSA9|TYW3_MOUSE  89 LKGAT---------------SEAVLKFEPFILHVQCRTLQDAQTLHSVAIDSGFRNSGITVGKRGKTMLAVRGTHGLEVPLTHKGkLMV 162
                           ****5...............5679**********************************************************5555*** PP

                           -HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
                  TYW3 183 seeylkllvklanerfeenkkrierfeealk 213
                           +eey+++l+++an+++eenk+ri rf++ l+
  sp|Q8BSA9|TYW3_MOUSE 163 TEEYIEFLLTIANQKMEENKRRIGRFYNYLQ 193
                           ***************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        22289  (11757923 residues searched)
Passed MSV filter:                       839  (0.0376419); expected 445.8 (0.02)
Passed bias filter:                      493  (0.0221185); expected 445.8 (0.02)
Passed Vit filter:                        38  (0.00170488); expected 22.3 (0.001)
Passed Fwd filter:                         3  (0.000134596); expected 0.2 (1e-05)
Initial search space (Z):              22289  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08
# Mc/sec: 31452.44
//
[ok]