# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TYW3.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TYW3 [M=214] Accession: PF02676.13 Description: Methyltransferase TYW3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-40 136.7 0.5 3e-20 72.9 0.1 2.2 2 tr|A7RZ42|A7RZ42_NEMVE Predicted protein OS=Nematostella vec 1.2e-17 64.5 0.0 1.6e-17 64.0 0.0 1.3 1 tr|A7RZ41|A7RZ41_NEMVE Predicted protein OS=Nematostella vec Domain annotation for each sequence (and alignments): >> tr|A7RZ42|A7RZ42_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g204295 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.9 0.1 2.8e-21 3.5e-17 2 55 .. 7 55 .. 6 59 .. 0.90 2 ! 72.9 0.1 2.5e-24 3e-20 140 213 .. 56 130 .. 55 131 .. 0.95 Alignments for each domain: == domain 1 score: 62.9 bits; conditional E-value: 2.8e-21 HHHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE.. CS TYW3 2 rKakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvfle 55 +K+++L++ d+s+kGs+De+i++l+d in l+ ++TtSSCsGR+svf+e tr|A7RZ42|A7RZ42_NEMVE 7 QKQQTLSQ-----ADLSKKGSIDEPIVNLVDYINGLDAFFTTSSCSGRISVFTE 55 57777777.....6**************************************76 PP == domain 2 score: 72.9 bits; conditional E-value: 2.5e-24 HHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEE.SSTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS TYW3 140 lsaAlsaGfreSGivslkkkkvivairsglklevpig.rkkllvseeylkllvklanerfeenkkrierfeealk 213 l+a l++G+++SGiv +k+++++a+rs+++levp+ +++llvs+ey++++v++an+++e+nk+ri+rf+++lk tr|A7RZ42|A7RZ42_NEMVE 56 LKASLESGYKNSGIVIGRKSRYMMAVRSTHSLEVPLIcNGNLLVSKEYIQYVVDMANKKMEDNKDRIQRFYTKLK 130 67899********************************7767********************************98 PP >> tr|A7RZ41|A7RZ41_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g204294 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.0 0.0 1.3e-21 1.6e-17 2 55 .. 7 55 .. 6 107 .. 0.86 Alignments for each domain: == domain 1 score: 64.0 bits; conditional E-value: 1.3e-21 HHHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE.. CS TYW3 2 rKakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvfle 55 +K+++L++ d+s+kGs+De+i++l+d in l+ ++TtSSCsGR+svf+e tr|A7RZ41|A7RZ41_NEMVE 7 QKQQTLSQ-----ADLSKKGSIDEPIVNLVDYINGLDAFFTTSSCSGRISVFTE 55 57777777.....6**************************************65 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (214 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 752 (0.0307843); expected 488.6 (0.02) Passed bias filter: 432 (0.0176846); expected 488.6 (0.02) Passed Vit filter: 28 (0.00114623); expected 24.4 (0.001) Passed Fwd filter: 3 (0.00012281); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.07 # Mc/sec: 25245.72 // [ok]