# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-55 188.5 0.4 2.2e-55 187.7 0.4 1.4 1 tr|H2PZ90|H2PZ90_PANTR TYW3 isoform 2 OS=Pan troglodytes OX=
Domain annotation for each sequence (and alignments):
>> tr|H2PZ90|H2PZ90_PANTR TYW3 isoform 2 OS=Pan troglodytes OX=9598 GN=TYW3 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 187.7 0.4 9.6e-60 2.2e-55 3 213 .. 11 193 .. 9 194 .. 0.94
Alignments for each domain:
== domain 1 score: 187.7 bits; conditional E-value: 9.6e-60
HHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HH CS
TYW3 3 KakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkee 89
Ka++L++ d+s+kGsvDe+++el++ +n +++++TtSSC+GR+ ++ ++ + + +k+++ wl+v+H+ + ++
tr|H2PZ90|H2PZ90_PANTR 11 KAQCLSK-----ADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLL---------DQGINGFEVQKQNCCWLLVTHKLCVKD 83
6777776.....6**************************************.........56778888999999************* PP
HHHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEE CS
TYW3 90 ellaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpig 176
+++ +l++ + + ++kfeP++Lhv+cr+l++Aq l+s+A+++Gfr+SGi+ k++k ++a+rs+++levp++
tr|H2PZ90|H2PZ90_PANTR 84 DVIVALKKAN---------------GDATLKFEPFVLHVQCRQLQDAQILHSMAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLS 155
*******994...............6789********************************************************** PP
SST.S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 177 rkk.llvseeylkllvklanerfeenkkrierfeealk 213
+k l+v+eey+++l+++an+++eenkkrierf + l+
tr|H2PZ90|H2PZ90_PANTR 156 HKGkLMVTEEYIDFLLNVANQKMEENKKRIERFCNCLQ 193
5555*****************************99886 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 23008 (11942255 residues searched)
Passed MSV filter: 892 (0.0387691); expected 460.2 (0.02)
Passed bias filter: 547 (0.0237743); expected 460.2 (0.02)
Passed Vit filter: 48 (0.00208623); expected 23.0 (0.001)
Passed Fwd filter: 3 (0.000130389); expected 0.2 (1e-05)
Initial search space (Z): 23008 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08
# Mc/sec: 31945.53
//
[ok]