# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    5.8e-32  110.4   0.1    6.6e-32  110.2   0.1    1.0  1  tr|S4RTL9|S4RTL9_PETMA  Uncharacterized protein OS=Petromyzon


Domain annotation for each sequence (and alignments):
>> tr|S4RTL9|S4RTL9_PETMA  Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.1   4.9e-36   6.6e-32     116     207 ..      10     102 ..       3     105 .] 0.94

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 4.9e-36
                             EEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S---HHHHHHHHHHHHHHHHHH CS
                    TYW3 116 livfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.llvseeylkllvklanerfeen 201
                               vfkfeP++Lhv c  le+Aq l+ +A+++Gfr+SGi+  kk+k+iva+rs+++levp+ +   l+v ++yl++lv++an +++en
  tr|S4RTL9|S4RTL9_PETMA  10 DSVFKFEPFVLHVHCLRLEEAQLLHMVAVESGFRNSGITVGKKGKIIVAVRSTHALEVPLCQAGrLMVPHDYLAFLVAIANGKMAEN 96 
                             568**********************************************************6555********************** PP

                             HHHHHH CS
                    TYW3 202 kkrier 207
                             ++r++r
  tr|S4RTL9|S4RTL9_PETMA  97 RERVAR 102
                             ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                        13539  (5048892 residues searched)
Passed MSV filter:                       394  (0.0291011); expected 270.8 (0.02)
Passed bias filter:                      252  (0.0186129); expected 270.8 (0.02)
Passed Vit filter:                        18  (0.00132949); expected 13.5 (0.001)
Passed Fwd filter:                         2  (0.000147721); expected 0.1 (1e-05)
Initial search space (Z):              13539  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.03
# Mc/sec: 36015.43
//
[ok]