# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TYW3.hmm.txt
# target sequence database:        proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TYW3  [M=214]
Accession:   PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    5.5e-66  220.4   0.0    7.1e-66  220.1   0.0    1.1  1  sp|P53177|TYW3_YEAST  tRNA wybutosine-synthesizing protein 3 


Domain annotation for each sequence (and alignments):
>> sp|P53177|TYW3_YEAST  tRNA wybutosine-synthesizing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.1   0.0   1.2e-69   7.1e-66       1     213 [.       9     226 ..       9     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 220.1 bits;  conditional E-value: 1.2e-69
                           HHHHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HH CS
                  TYW3   1 erKakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkee 89 
                           ++K++iL+e+++++ d+spkG++De ++++id+in+  d+vTtSSCsGRvsvfleg+ks    + + k ggk++ggkwl+v+Hd  k  
  sp|P53177|TYW3_YEAST   9 QKKRAILNEIDSTQPDLSPKGTIDELCLPIIDLINASADMVTTSSCSGRVSVFLEGTKS---YNGEVKIGGKGQGGKWLYVTHDREKVI 94 
                           69********************************************************6...677899********************* PP

                           HHHHHHCS--...................SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEE CS
                  TYW3  90 ellaelegleeeeesaksseseee.....erlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklev 173
                            +l+el++++e + + + +e  +e      r+i++k+eP+ILhv+cr++++A+kl+++A+s+GfreSGi s    +++vair+++kl+v
  sp|P53177|TYW3_YEAST  95 GWLDELKSKSEFSFELSGKEIPTEkvtgsIRYILYKYEPFILHVKCRDFQAASKLYNTAMSCGFRESGIGS----NNLVAIRINIKLDV 179
                           *****9999988777666665555788889*****************************************....889*********** PP

                           EEE.......SSTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
                  TYW3 174 pig.......rkkllvseeylkllvklanerfeenkkrierfeealk 213
                           p+g       + k +v++ey+++l +l+ ++f en+++++ ++++++
  sp|P53177|TYW3_YEAST 180 PLGyldetsgTLKFFVTPEYVSVLDSLSLSKFDENTRKMQALYDRIE 226
                           ********97444******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (214 nodes)
Target sequences:                         6049  (2936363 residues searched)
Passed MSV filter:                       267  (0.0441395); expected 121.0 (0.02)
Passed bias filter:                      120  (0.019838); expected 121.0 (0.02)
Passed Vit filter:                         9  (0.00148785); expected 6.0 (0.001)
Passed Fwd filter:                         1  (0.000165317); expected 0.1 (1e-05)
Initial search space (Z):               6049  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.03
# Mc/sec: 20946.06
//
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