# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-42 144.3 5.7 5.5e-30 105.0 0.3 2.9 3 tr|W4ZK25|W4ZK25_STRPU Uncharacterized protein OS=Strongyloc
------ inclusion threshold ------
0.079 13.0 0.1 0.1 12.6 0.1 1.2 1 tr|W4XK92|W4XK92_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4ZK25|W4ZK25_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.0 0.3 3.8e-34 5.5e-30 13 139 .. 12 116 .. 3 117 .. 0.89
2 ! 41.4 0.0 1.1e-14 1.6e-10 163 213 .. 116 167 .. 115 168 .. 0.93
3 ? 0.1 0.3 0.046 6.6e+02 62 87 .. 174 211 .. 169 248 .. 0.54
Alignments for each domain:
== domain 1 score: 105.0 bits; conditional E-value: 3.8e-34
..HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHHHHHHHCS-- CS
TYW3 13 pdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeeellaelegle 99
+ td s+kG++D+ i++l++ in++++++TtSSCsGR+ +f +e+ ++ + +k+g++wlfvsH+ +++++++++l +e
tr|W4ZK25|W4ZK25_STRPU 12 KCTDFSRKGEIDQFIISLVEIINNHDSYFTTSSCSGRIILF---------SESLDEYSVRKKGCRWLFVSHESASTADIISALDLEE 89
339**************************************.........45667777778999*****************999886 PP
..............SSEEEEEEE--EEEEEESSHHHHHHH CS
TYW3 100 eeeesaksseseeeerlivfkfePmILhvlcrslehAqkl 139
+ ++ vfkfeP++Lhv+c+++ehA+k+
tr|W4ZK25|W4ZK25_STRPU 90 T-------------KGEAVFKFEPFVLHVQCETTEHARKM 116
3.............6789*******************986 PP
== domain 2 score: 41.4 bits; conditional E-value: 1.1e-14
EEEE---EEEEEEESST.S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
TYW3 163 vairsglklevpigrkk.llvseeylkllvklanerfeenkkrierfeealk 213
+airs+++levp+ ++ llvse+y++++v+lan++++en +rie+f++ l+
tr|W4ZK25|W4ZK25_STRPU 116 MAIRSTHGLEVPLTKEGrLLVSEDYIDFIVSLANSKMKENFNRIEKFQDTLQ 167
69************5555*******************************997 PP
== domain 3 score: 0.1 bits; conditional E-value: 0.046
....EESSTT-STT-EEEEEESS--............- CS
TYW3 62 aeekaaksggkkgggkwlfvsHdpv............k 87
++++a++++ k+++g+ l H + k
tr|W4ZK25|W4ZK25_STRPU 174 KRNEADPNSRKNKHGRRLNERHPVKhkltqtdtsdteK 211
44555556666666666666665543332443332220 PP
>> tr|W4XK92|W4XK92_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.1 7.3e-06 0.1 38 60 .. 83 105 .. 75 124 .. 0.78
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 7.3e-06
SSEEEEEEES-EEEEE....... CS
TYW3 38 edlvTtSSCsGRvsvflegrksa 60
e ++TtSSCsG v+ +l g +++
tr|W4XK92|W4XK92_STRPU 83 EMVMTTSSCSGDVAAVLCGVEKR 105
6689*********9998776643 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 1175 (0.0410925); expected 571.9 (0.02)
Passed bias filter: 585 (0.0204588); expected 571.9 (0.02)
Passed Vit filter: 41 (0.00143387); expected 28.6 (0.001)
Passed Fwd filter: 3 (0.000104917); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.11
# Mc/sec: 27753.94
//
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