# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TYW3.hmm.txt # target sequence database: proteomes/Trichoplax_adhaerens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TYW3 [M=214] Accession: PF02676.13 Description: Methyltransferase TYW3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-47 159.6 0.9 7e-47 158.9 0.9 1.2 1 tr|B3RNK7|B3RNK7_TRIAD Uncharacterized protein OS=Trichoplax Domain annotation for each sequence (and alignments): >> tr|B3RNK7|B3RNK7_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53200 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.9 0.9 6e-51 7e-47 4 186 .. 9 161 .. 5 183 .. 0.87 Alignments for each domain: == domain 1 score: 158.9 bits; conditional E-value: 6e-51 HHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHH CS TYW3 4 akiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeee 90 +++L++ td+s kGs+D+ki++l+++in+ +d++TtSSCsGR+++f ++ ++ k ++++ lfv+Hd ++e++ tr|B3RNK7|B3RNK7_TRIAD 9 NRCLSS-----TDNSIKGSIDAKILSLVQLINENKDYFTTSSCSGRIMIF------------RKVNQLKSKNCESLFVTHDSITEDD 78 444444.....8**************************************............5566677778999*********999 PP HHHHHCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEES CS TYW3 91 llaelegleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigr 177 + l+g+ e+ ++fkfeP++Lhv+cr+++hA+ ll++Al++Gfr+SGiv kk++ iva+rs+ levp+ + tr|B3RNK7|B3RNK7_TRIAD 79 VNFLLNGQI--------------EDSVIFKFEPFVLHVQCRTMNHARLLLKVALTSGFRNSGIVLGKKERLIVAVRSTQTLEVPLTN 151 999999987..............678************************************************************5 PP ST.S---HHH CS TYW3 178 kk.llvseey 186 + +l+s+++ tr|B3RNK7|B3RNK7_TRIAD 152 QGaMLISQDK 161 4447777664 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (214 nodes) Target sequences: 11518 (5222075 residues searched) Passed MSV filter: 444 (0.0385484); expected 230.4 (0.02) Passed bias filter: 255 (0.0221393); expected 230.4 (0.02) Passed Vit filter: 24 (0.0020837); expected 11.5 (0.001) Passed Fwd filter: 1 (8.68206e-05); expected 0.1 (1e-05) Initial search space (Z): 11518 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.03 # Mc/sec: 37250.80 // [ok]