# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TYW3.hmm.txt
# target sequence database: proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TYW3 [M=214]
Accession: PF02676.13
Description: Methyltransferase TYW3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-58 197.9 1.1 2.7e-58 197.2 1.1 1.3 1 tr|F7EK24|F7EK24_XENTR tRNA-yW synthesizing protein 3 homolo
------ inclusion threshold ------
0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 sp|Q5M905|NPL_XENTR N-acetylneuraminate lyase OS=Xenopus
0.83 9.4 4.7 49 3.6 0.1 3.6 4 tr|F6QXG6|F6QXG6_XENTR Uncharacterized protein OS=Xenopus tr
Domain annotation for each sequence (and alignments):
>> tr|F7EK24|F7EK24_XENTR tRNA-yW synthesizing protein 3 homolog OS=Xenopus tropicalis OX=8364 GN=tyw3 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 197.2 1.1 3.4e-62 2.7e-58 11 212 .. 11 192 .. 2 194 .. 0.92
Alignments for each domain:
== domain 1 score: 197.2 bits; conditional E-value: 3.4e-62
.......HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHHHHHH CS
TYW3 11 svpd...tdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeekaaksggkkgggkwlfvsHdpvkeeellae 94
++++ d s+kGsvDe+i e +++in++e+++TtSSCsGRv ++ +e+ ++s +k++++wlfv+H+ +k ++++a+
tr|F7EK24|F7EK24_XENTR 11 KQQSlrkADVSKKGSVDEDIEETVRLINQQERYFTTSSCSGRVIMI---------NETLDSSIIQKQNCSWLFVTHQLCKPDDVFAA 88
33333349**************************************.........56777888888999****************** PP
HCS--..............SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEESST.S CS
TYW3 95 legleeeeesaksseseeeerlivfkfePmILhvlcrslehAqkllsaAlsaGfreSGivslkkkkvivairsglklevpigrkk.l 180
l++ ++ +v+kfeP++Lhv+c++le+Aq l+ +A+++Gfr+SGi+ kk+k+i+a+rs+++levp+ ++ +
tr|F7EK24|F7EK24_XENTR 89 LKNA---------------TGDVVLKFEPFVLHVQCHKLEDAQILHGVAINSGFRNSGITVGKKGKIIMAVRSTHGLEVPLTQNGkC 160
**99...............589************************************************************6556* PP
---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
TYW3 181 lvseeylkllvklanerfeenkkrierfeeal 212
lvs+ey+++lv++an+++eenk+ri rf++ l
tr|F7EK24|F7EK24_XENTR 161 LVSQEYIEFLVQTANRKMEENKRRITRFHSCL 192
****************************9987 PP
>> sp|Q5M905|NPL_XENTR N-acetylneuraminate lyase OS=Xenopus tropicalis OX=8364 GN=npl PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 2.5e-05 0.2 114 148 .. 71 105 .. 29 119 .. 0.79
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 2.5e-05
SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT- CS
TYW3 114 erlivfkfePmILhvlcrslehAqkllsaAlsaGf 148
++ + k++ +I+hv c sl++ ++l + A+s+G
sp|Q5M905|NPL_XENTR 71 VKQARGKMDNVIIHVGCLSLSDSKDLAAHAASCGA 105
666677999************************95 PP
>> tr|F6QXG6|F6QXG6_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.1 0.18 1.4e+03 46 59 .. 30 53 .. 29 85 .. 0.66
2 ? 3.6 0.1 0.0061 49 44 69 .. 134 163 .. 130 207 .. 0.59
3 ? 2.7 0.0 0.011 93 43 59 .. 239 259 .. 228 301 .. 0.79
4 ? 2.4 0.1 0.014 1.1e+02 46 59 .. 347 368 .. 337 433 .. 0.75
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.18
ES-EEEEE................ CS
TYW3 46 CsGRvsvflegrk..........s 59
C GRv ++ +g+ s
tr|F6QXG6|F6QXG6_XENTR 30 CEGRVEIYYNGTWgtvcddlwnmS 53
99******9887655555555540 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.0061
EEES-EEEEE.....................EESS CS
TYW3 44 SSCsGRvsvflegrk.........saeaeekaaks 69
SSC GR v +g+ + k+ak
tr|F6QXG6|F6QXG6_XENTR 134 SSCKGRLEVNHNGTWgtvcndqwdK-----KDAKV 163
9*********888776666443321.....33333 PP
== domain 3 score: 2.7 bits; conditional E-value: 0.011
EEEES-EEEEE.......... CS
TYW3 43 tSSCsGRvsvflegrk....s 59
SSC GR v +g+ +
tr|F6QXG6|F6QXG6_XENTR 239 NSSCKGRLEVNHNGTWgtvcN 259
5*********98777644442 PP
== domain 4 score: 2.4 bits; conditional E-value: 0.014
ES-EEEEE.............. CS
TYW3 46 CsGRvsvflegrk........s 59
C+GR vf +g+ +
tr|F6QXG6|F6QXG6_XENTR 347 CAGRLEVFYDGEWgsvcdddwD 368
********99986555555550 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (214 nodes)
Target sequences: 24182 (11782085 residues searched)
Passed MSV filter: 868 (0.0358945); expected 483.6 (0.02)
Passed bias filter: 484 (0.0200149); expected 483.6 (0.02)
Passed Vit filter: 41 (0.00169548); expected 24.2 (0.001)
Passed Fwd filter: 5 (0.000206765); expected 0.2 (1e-05)
Initial search space (Z): 24182 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 31517.08
//
[ok]