# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-14 55.5 0.0 2.9e-14 54.6 0.0 1.5 1 tr|A0A1X7V1P9|A0A1X7V1P9_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.16 13.8 0.2 41 6.1 0.0 2.7 2 tr|A0A1X7TQG8|A0A1X7TQG8_AMPQE Uncharacterized protein OS=Amphi
0.2 13.5 1.9 88 5.0 0.0 4.1 3 tr|A0A1X7TUS8|A0A1X7TUS8_AMPQE Uncharacterized protein OS=Amphi
0.44 12.4 1.1 11 7.9 0.3 2.6 2 tr|A0A1X7U3U1|A0A1X7U3U1_AMPQE Uncharacterized protein OS=Amphi
0.47 12.3 3.6 1.5 10.7 2.6 2.4 2 tr|A0A1X7TRL9|A0A1X7TRL9_AMPQE Uncharacterized protein OS=Amphi
5.4 8.9 4.7 13 7.7 0.8 3.5 3 tr|A0A1X7VI50|A0A1X7VI50_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7V1P9|A0A1X7V1P9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.6 0.0 4e-18 2.9e-14 1 68 [] 146 256 .. 146 256 .. 0.98
Alignments for each domain:
== domain 1 score: 54.6 bits; conditional E-value: 4e-18
BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S..... CS
Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy..... 41
kll++n+L+++ +kg pL dw++l ++a g + lp e+p d
tr|A0A1X7V1P9|A0A1X7V1P9_AMPQE 146 KLLTHNMLTSH-VKGvingyPLkliarkvevkdvqfnsdfisrmlkkvDWPVLKKTADmIGHGQsLPIELPVDFesneg 223
789********.********9999***************************************9*******9999**** PP
......CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 42 ......ellleldieegeLvCpncgraYpIkdG 68
++l+e++i+eg L Cp+ gr +pI+dG
tr|A0A1X7V1P9|A0A1X7V1P9_AMPQE 224 flqsahHALMEVEIIEGDLECPESGRLFPIQDG 256
********************************9 PP
>> tr|A0A1X7TQG8|A0A1X7TQG8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.1 0.0 0.0057 41 41 60 .. 103 126 .. 55 132 .. 0.83
2 ? 5.2 0.0 0.011 79 41 60 .. 365 388 .. 308 394 .. 0.83
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.0057
S....CHHTTEECCCCEEEETTTT CS
Trm112p 41 y....ellleldieegeLvCpncg 60
y ++++++ ++g L Cpncg
tr|A0A1X7TQG8|A0A1X7TQG8_AMPQE 103 YaqqcKACFKVYFKSGLLFCPNCG 126
1444579****************9 PP
== domain 2 score: 5.2 bits; conditional E-value: 0.011
S....CHHTTEECCCCEEEETTTT CS
Trm112p 41 y....ellleldieegeLvCpncg 60
y ++++++ +g L Cpncg
tr|A0A1X7TQG8|A0A1X7TQG8_AMPQE 365 YaqqcKACFKVYFRSGLLFCPNCG 388
14445789***************9 PP
>> tr|A0A1X7TUS8|A0A1X7TUS8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.2 1.6 1.2e+04 30 55 .. 19 41 .. 10 41 .. 0.75
2 ? 5.0 0.0 0.012 88 50 65 .. 710 725 .. 677 727 .. 0.72
3 ? 4.8 0.0 0.014 1e+02 52 65 .. 790 803 .. 747 805 .. 0.75
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 1.6
---S-SS----SCHHTTEECCCCEEE CS
Trm112p 30 lnelpkekpedyellleldieegeLv 55
+el+++ ++ + +l+++e+eL+
tr|A0A1X7TUS8|A0A1X7TUS8_AMPQE 19 RAELKEQEDDFKH---QLQKQEQELT 41
4567888888887...9999999995 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.012
CCCEEEETTTTEEEEE CS
Trm112p 50 eegeLvCpncgraYpI 65
++ L+Cp+cg Y++
tr|A0A1X7TUS8|A0A1X7TUS8_AMPQE 710 LDPNLICPKCGKQYRV 725
4578**********97 PP
== domain 3 score: 4.8 bits; conditional E-value: 0.014
CEEEETTTTEEEEE CS
Trm112p 52 geLvCpncgraYpI 65
LvCp+cg Y++
tr|A0A1X7TUS8|A0A1X7TUS8_AMPQE 790 PNLVCPKCGKQYRV 803
57**********98 PP
>> tr|A0A1X7U3U1|A0A1X7U3U1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.4 0.0 0.081 5.9e+02 47 63 .. 32 48 .. 5 49 .. 0.77
2 ? 7.9 0.3 0.0015 11 1 59 [. 73 145 .. 73 148 .. 0.61
Alignments for each domain:
== domain 1 score: 2.4 bits; conditional E-value: 0.081
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
++++e+eL+C+ c +Y
tr|A0A1X7U3U1|A0A1X7U3U1_AMPQE 32 FKKLEEELTCEVCLKIY 48
7899*********8777 PP
== domain 2 score: 7.9 bits; conditional E-value: 0.0015
BTGGCCC-B-TTTHH....C-..........-HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTT CS
Trm112p 1 kllllniLaCpackg....pL..........dwealvevaalglnelpkekpedyellleldieegeLvCpnc 59
++l+l+ ++Cp+c++ pL + l ev +l ++e +k e+++ +++++e + +C+ c
tr|A0A1X7U3U1|A0A1X7U3U1_AMPQE 73 DELTLSSIKCPLCRSpaeiPLqgaaglppafHINNLKEVYNLMIAESKKVADEEVVCYVQTHDEPLKYYCNTC 145
6799***********9999886666666665333333333333444444444444555667776666666666 PP
>> tr|A0A1X7TRL9|A0A1X7TRL9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.0 2 1.4e+04 53 57 .. 175 179 .. 138 233 .. 0.64
2 ? 10.7 2.6 0.00021 1.5 10 63 .. 361 413 .. 356 414 .] 0.85
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 2
EEEET CS
Trm112p 53 eLvCp 57
+L +p
tr|A0A1X7TRL9|A0A1X7TRL9_AMPQE 175 SLLSP 179
33332 PP
== domain 2 score: 10.7 bits; conditional E-value: 0.00021
-TTTHHC--HHHHHHHHH.TT---S-SS----S..CHHTTEECCCCEEEETTTTEEE CS
Trm112p 10 CpackgpLdwealvevaa.lglnelpkekpedy..ellleldieegeLvCpncgraY 63
C+ c +pLd +al + + + l+ + ++ + ++++ g+LvC nc ++Y
tr|A0A1X7TRL9|A0A1X7TRL9_AMPQE 361 CSRCQHPLDDKALDTGHGlYHEHCLACVHCRRVteS----MVVVGGSLVCGNCIQHY 413
677**************9666666999999999755....99***********8887 PP
>> tr|A0A1X7VI50|A0A1X7VI50_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.2 1.5 1.1e+04 32 32 .. 188 188 .. 94 230 .. 0.62
2 ? 2.3 0.1 0.087 6.3e+02 52 63 .. 578 589 .. 553 590 .. 0.79
3 ? 7.7 0.8 0.0017 13 8 65 .. 580 670 .. 578 672 .. 0.63
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 1.5
- CS
Trm112p 32 e 32
+
tr|A0A1X7VI50|A0A1X7VI50_AMPQE 188 R 188
2 PP
== domain 2 score: 2.3 bits; conditional E-value: 0.087
CEEEETTTTEEE CS
Trm112p 52 geLvCpncgraY 63
LvCp+c+ Y
tr|A0A1X7VI50|A0A1X7VI50_AMPQE 578 PNLVCPKCRKQY 589
5799**999888 PP
== domain 3 score: 7.7 bits; conditional E-value: 0.0017
-B-TTTHH........C-..............-HHHHHHHHHTT---S-SS----S....................... CS
Trm112p 8 LaCpackg........pL..............dwealvevaalglnelpkekpedy....................... 41
L+Cp c++ +L +
tr|A0A1X7VI50|A0A1X7VI50_AMPQE 580 LVCPKCRKqyregqiqKLrrhinascsnedsdE----------------------Sdeetdkdeeeirlmakqrrkemq 636
788888887777766655333333333333220......................122234445555566666666667 PP
.....CHHTTEECCC.....CEEEETTTTEEEEE CS
Trm112p 42 .....ellleldiee.....geLvCpncgraYpI 65
e+l++ d+++ LvCp+cg Y++
tr|A0A1X7VI50|A0A1X7VI50_AMPQE 637 gpstaEVLFNDDDDNslpydPNLVCPKCGKQYRV 670
7777788888888888888899********9998 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1673 (0.0385173); expected 868.7 (0.02)
Passed bias filter: 1194 (0.0274894); expected 868.7 (0.02)
Passed Vit filter: 106 (0.00244043); expected 43.4 (0.001)
Passed Fwd filter: 6 (0.000138137); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.09
# Mc/sec: 11119.22
//
[ok]