# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Trm112p.hmm.txt # target sequence database: proteomes/Anolis_carolinensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Trm112p [M=68] Accession: PF03966.15 Description: Trm112p-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-15 56.5 0.0 3.8e-15 56.3 0.0 1.1 1 tr|H9GTE2|H9GTE2_ANOCA Uncharacterized protein OS=Anolis car 3.3e-08 34.0 0.2 6.6e-08 33.1 0.2 1.5 1 tr|G1KN07|G1KN07_ANOCA PIGY upstream reading frame OS=Anolis 0.0063 17.1 14.9 0.1 13.2 0.2 5.5 4 tr|G1KNA6|G1KNA6_ANOCA Zinc finger protein OS=Anolis carolin ------ inclusion threshold ------ 0.06 14.0 2.1 0.24 12.1 0.1 3.2 2 tr|G1KVY9|G1KVY9_ANOCA Uncharacterized protein OS=Anolis car 0.2 12.3 4.4 51 4.6 0.0 3.6 2 tr|G1KAM1|G1KAM1_ANOCA Tripartite motif containing 67 OS=Ano 0.22 12.2 1.9 13 6.5 0.5 3.6 3 tr|H9GIS1|H9GIS1_ANOCA Uncharacterized protein OS=Anolis car 2 9.1 5.9 5.6 7.7 5.9 1.8 1 tr|H9GMR4|H9GMR4_ANOCA SH3 domain containing ring finger 1 O 2.5 8.8 9.0 33 5.2 0.2 3.5 2 tr|H9G3X0|H9G3X0_ANOCA Tripartite motif containing 9 OS=Anol 2.8 8.6 5.8 22 5.7 3.0 4.0 2 tr|H9GKF4|H9GKF4_ANOCA Zinc finger and BTB domain containing 3.5 8.3 6.5 38 5.0 0.1 4.1 3 tr|H9GJD9|H9GJD9_ANOCA Uncharacterized protein (Fragment) OS 5.3 7.7 7.8 13 6.5 5.8 2.6 2 tr|H9GKD9|H9GKD9_ANOCA SH3 domain containing ring finger 2 O Domain annotation for each sequence (and alignments): >> tr|H9GTE2|H9GTE2_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=trmt112 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.3 0.0 2.2e-18 3.8e-15 1 68 [] 2 114 .. 2 114 .. 0.98 Alignments for each domain: == domain 1 score: 56.3 bits; conditional E-value: 2.2e-18 BTGGCCC-B-TTTHH.......C-..........................-HHHHHHHHH.TT---.S-SS----S........... CS Trm112p 1 kllllniLaCpackg.......pL..........................dwealvevaa.lglne.lpkekpedy........... 41 kll++n+L+++ ++g pL +w alve+a+ lg + lp+e+ dy tr|H9GTE2|H9GTE2_ANOCA 2 KLLTHNMLTSH-VRGvrpgggfPLriqatevkvnnvdfnpeftarmvpkvEWGALVEAAEsLGHRSdLPAEPIPDYesnedflrkvh 87 789********.***9******99*************************************************************** PP CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 42 ellleldieegeLvCpncgraYpIkdG 68 ++l+e++++eg+L Cp++gr +pI +G tr|H9GTE2|H9GTE2_ANOCA 88 HVLMEVEVVEGVLKCPDTGREFPITKG 114 ************************987 PP >> tr|G1KN07|G1KN07_ANOCA PIGY upstream reading frame OS=Anolis carolinensis OX=28377 GN=PYURF PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.1 0.2 3.9e-11 6.6e-08 2 68 .] 9 47 .. 8 47 .. 0.95 Alignments for each domain: == domain 1 score: 33.1 bits; conditional E-value: 3.9e-11 TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68 ll iL+Cp+ k+pL +++ ++eL++++ g+aYpI dG tr|G1KN07|G1KN07_ANOCA 9 ASLLQILVCPLSKKPL------------------------R----YEESTNELINEELGIAYPITDG 47 579*************........................5....9********************9 PP >> tr|G1KNA6|G1KNA6_ANOCA Zinc finger protein OS=Anolis carolinensis OX=28377 GN=PRDM5 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.2 6.2e-05 0.1 41 67 .. 177 212 .. 137 212 .. 0.76 2 ! 6.4 0.5 0.0085 14 10 64 .. 350 414 .. 295 415 .. 0.73 3 ? -2.7 0.0 5.5 9.3e+03 48 63 .. 426 441 .. 422 445 .. 0.82 4 ? 0.6 3.2 0.54 9.1e+02 33 63 .. 542 582 .. 433 586 .. 0.64 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 6.2e-05 S.........CHHTTEECCCCEEEETTTTEEEEEET CS Trm112p 41 y.........ellleldieegeLvCpncgraYpIkd 67 + ++l++ ee e+ C+ncg +p+k+ tr|G1KNA6|G1KNA6_ANOCA 177 AsqeilaehlQTLHQKPSEEKEFKCRNCGKKFPVKQ 212 044444444477889999****************85 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0085 -TTTHH...C--HHHHHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS Trm112p 10 Cpackg...pLdwealvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgraYp 64 C +c++ + l +v+a + + + +++k++ + +++ ee ++C++c+ ++ tr|G1KNA6|G1KNA6_ANOCA 350 CEVCHKsfkR-----LDQVTAhKIIHSeDKPYKCKLCgkgfahrnvyknH--KKTHSEERPFQCEECKALFR 414 4445444433.....455555556666689999998899*****999773..579************99885 PP == domain 3 score: -2.7 bits; conditional E-value: 5.5 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + e ++ C +c+ ++ tr|G1KNA6|G1KNA6_ANOCA 426 HNSERTFKCDHCDATF 441 67789999*9999877 PP == domain 4 score: 0.6 bits; conditional E-value: 0.54 S-SS----S.............CHHTTEECCCCEEEETTTTEEE CS Trm112p 33 lpkekpedy.............ellleldieegeLvCpncgraY 63 ++++ ++ ++++ e ++C c++ + tr|G1KNA6|G1KNA6_ANOCA 542 EKPYQ---CsecnkafsqkrglDEHMRTHTGEKPFQCDVCDLSF 582 22222...123355566666664446677777777777777766 PP >> tr|G1KVY9|G1KVY9_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 0.00014 0.24 41 68 .] 393 430 .. 360 430 .. 0.65 2 ? -1.3 0.2 2 3.4e+03 56 63 .. 476 483 .. 444 511 .. 0.69 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00014 S.............CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 41 y.............ellleldieegeLvCpncgraYpIkdG 68 e +++ +e ++vC +cg a+ ++++ tr|G1KVY9|G1KVY9_ANOCA 393 CgkcftqkselvehE---KTHATEDSFVCFACGKAFAVRNS 430 355555554443322...589999**************995 PP == domain 2 score: -1.3 bits; conditional E-value: 2 ETTTTEEE CS Trm112p 56 CpncgraY 63 C++cgr++ tr|G1KVY9|G1KVY9_ANOCA 476 CSDCGRTF 483 56666655 PP >> tr|G1KAM1|G1KAM1_ANOCA Tripartite motif containing 67 OS=Anolis carolinensis OX=28377 GN=TRIM67 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.03 51 49 63 .. 21 35 .. 8 36 .. 0.87 2 ? 2.9 3.3 0.1 1.7e+02 8 60 .. 169 241 .. 165 321 .. 0.64 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.03 CCCCEEEETTTTEEE CS Trm112p 49 ieegeLvCpncgraY 63 ++e+eL Cp cg + tr|G1KAM1|G1KAM1_ANOCA 21 VMEEELKCPVCGSLF 35 699*********988 PP == domain 2 score: 2.9 bits; conditional E-value: 0.1 -B-TTTHH...............C--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTT CS Trm112p 8 LaCpackg...............pLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncg 60 L+Cp+c+ +L +ea+v++ + ++ + +++k++ + ++++ ++++C +c+ tr|G1KAM1|G1KAM1_ANOCA 169 LTCPQCHRsasldhrglrgfqrnRL-LEAIVQRYQaARAAASAAAKCQLCdrnppepaaV----MCEQCEVFYCASCQ 241 8999999999666665555555555.7777777776666666666666656667765663....45555555555553 PP >> tr|H9GIS1|H9GIS1_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=snai2 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.2 3.3e+02 41 63 .. 110 137 .. 57 142 .. 0.68 2 ? 6.5 0.5 0.0075 13 43 63 .. 202 222 .. 144 223 .. 0.79 3 ? -0.4 0.0 1.1 1.8e+03 45 63 .. 232 250 .. 224 251 .. 0.79 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.2 S.........CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y.........ellleldieegeLvCpncgraY 63 + ie ++++C+ c+ +Y tr|H9GIS1|H9GIS1_ANOCA 110 EeriqsklsdA----HAIEAEKFQCSLCNKTY 137 04445433331....47888999***999998 PP == domain 2 score: 6.5 bits; conditional E-value: 0.0075 HHTTEECCCCEEEETTTTEEE CS Trm112p 43 llleldieegeLvCpncgraY 63 ++++ e + Cp+c+ra+ tr|H9GIS1|H9GIS1_ANOCA 202 GHIRTHTGEKPFSCPHCNRAF 222 44889999999*********9 PP == domain 3 score: -0.4 bits; conditional E-value: 1.1 TTEECCCCEEEETTTTEEE CS Trm112p 45 leldieegeLvCpncgraY 63 l+++ + + +C+nc ++ tr|H9GIS1|H9GIS1_ANOCA 232 LQTHSDVKKYQCKNCSKTF 250 77888888889****8877 PP >> tr|H9GMR4|H9GMR4_ANOCA SH3 domain containing ring finger 1 OS=Anolis carolinensis OX=28377 GN=SH3RF1 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 5.9 0.0033 5.6 3 60 .. 5 53 .. 3 55 .. 0.76 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0033 GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60 ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+ tr|H9GMR4|H9GMR4_ANOCA 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVSSRNELRCPECR 53 69*************..........12223344444...255599****************8 PP >> tr|H9G3X0|H9G3X0_ANOCA Tripartite motif containing 9 OS=Anolis carolinensis OX=28377 GN=TRIM9 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.2 0.019 33 48 64 .. 2 18 .. 1 18 [. 0.88 2 ? 3.1 4.1 0.087 1.5e+02 8 60 .. 148 267 .. 146 269 .. 0.71 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.019 ECCCCEEEETTTTEEEE CS Trm112p 48 dieegeLvCpncgraYp 64 +++e+eL Cp cg Y+ tr|H9G3X0|H9G3X0_ANOCA 2 EEMEEELKCPVCGSFYR 18 689**********9885 PP == domain 2 score: 3.1 bits; conditional E-value: 0.087 -B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S...................................... CS Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy...................................... 41 L+Cp+c+ L +e ++++ + + + l+ +++e++ tr|H9G3X0|H9G3X0_ANOCA 148 LTCPQCHRSLilderglrgfpknrVLEGVIDRYQqSKAAALRCQLCEKApkeatvmceqcdvfycdpcrlrchpprgplakhrllpp 234 899999998888888888888888788888888878888888888888887777666666666666666666666666666666666 PP ..............CHHTTEECCCCEEEETTTT CS Trm112p 42 ..............ellleldieegeLvCpncg 60 +++ ++ e+ +++C c+ tr|H9G3X0|H9G3X0_ANOCA 235 aqgrvsrrlsprkiSTCTDHELENHSMYCVQCK 267 666666666666666666667777777776665 PP >> tr|H9GKF4|H9GKF4_ANOCA Zinc finger and BTB domain containing 17 OS=Anolis carolinensis OX=28377 GN=ZBTB17 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 2 3.4e+03 41 63 .. 222 254 .. 192 255 .. 0.72 2 ? 5.7 3.0 0.013 22 11 63 .. 360 394 .. 259 395 .. 0.83 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 2 S............CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y............ellleldieegeLvCpncgraY 63 + ++++ e + C +c a+ tr|H9GKF4|H9GKF4_ANOCA 222 CgkefthtgnfkrH--IRIHTGEKPFSCQECSKAF 254 34445555555333..6788888889999998887 PP == domain 2 score: 5.7 bits; conditional E-value: 0.013 TTTHHC--HHHHHHHHHTT---S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS Trm112p 11 packgpLdwealvevaalglnelpkekpedy..........ellleldieegeLvCpncgraY 63 p+ ++ l+++i +g L C+ cg + tr|H9GKF4|H9GKF4_ANOCA 360 PH----------------------------CekkfnqvgnlKAHLKVHIADGPLKCRQCGKQF 394 33............................1344556666666799*************9765 PP >> tr|H9GJD9|H9GJD9_ANOCA Uncharacterized protein (Fragment) OS=Anolis carolinensis OX=28377 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.8 0.053 89 47 63 .. 150 166 .. 91 167 .. 0.83 2 ? -2.3 0.0 4.2 7.1e+03 48 64 .. 207 223 .. 196 226 .. 0.78 3 ? 5.0 0.1 0.022 38 24 67 .. 425 450 .. 378 451 .. 0.76 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.053 EECCCCEEEETTTTEEE CS Trm112p 47 ldieegeLvCpncgraY 63 ++ e ++C++cgr++ tr|H9GJD9|H9GJD9_ANOCA 150 THTGEKPFICSECGRCF 166 67788999*******99 PP == domain 2 score: -2.3 bits; conditional E-value: 4.2 ECCCCEEEETTTTEEEE CS Trm112p 48 dieegeLvCpncgraYp 64 + e + C +cg ++ tr|H9GJD9|H9GJD9_ANOCA 207 HTGEKPFKCLECGKSFR 223 55667789999*99997 PP == domain 3 score: 5.0 bits; conditional E-value: 0.022 HHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEET CS Trm112p 24 evaalglnelpkekpedyellleldieegeLvCpncgraYpIkd 67 ++ + +++ e ++C +cgr+++ k+ tr|H9GJD9|H9GJD9_ANOCA 425 TRHQ------------------RIHSGEKPFQCLECGRCFRLKQ 450 4443..................478889999*********9886 PP >> tr|H9GKD9|H9GKD9_ANOCA SH3 domain containing ring finger 2 OS=Anolis carolinensis OX=28377 GN=SH3RF2 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 5.8 0.0076 13 1 60 [. 3 53 .. 3 54 .. 0.69 2 ? 3.4 0.6 0.072 1.2e+02 3 17 .. 42 56 .. 40 86 .. 0.83 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0076 BTGGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS Trm112p 1 kllllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60 +l l ++L Cp+c g+Ld ++ lp + l ++ +++ eL Cp+c+ tr|H9GKD9|H9GKD9_ANOCA 3 DLALFDMLECPLCLGKLD----------ISAKvLPCQH---TfckPCLQRILKLHKELRCPECR 53 67899************2..........1122233333...255455556889999******97 PP == domain 2 score: 3.4 bits; conditional E-value: 0.072 GGCCC-B-TTTHHC- CS Trm112p 3 lllniLaCpackgpL 17 +l+ L Cp c+ p+ tr|H9GKD9|H9GKD9_ANOCA 42 KLHKELRCPECRAPV 56 788889999999987 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (68 nodes) Target sequences: 18528 (9796552 residues searched) Passed MSV filter: 1019 (0.0549978); expected 370.6 (0.02) Passed bias filter: 698 (0.0376727); expected 370.6 (0.02) Passed Vit filter: 74 (0.00399396); expected 18.5 (0.001) Passed Fwd filter: 17 (0.00091753); expected 0.2 (1e-05) Initial search space (Z): 18528 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.07 # Mc/sec: 9516.65 // [ok]