# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-15 56.5 0.0 3.8e-15 56.3 0.0 1.1 1 tr|H9GTE2|H9GTE2_ANOCA Uncharacterized protein OS=Anolis car
3.3e-08 34.0 0.2 6.6e-08 33.1 0.2 1.5 1 tr|G1KN07|G1KN07_ANOCA PIGY upstream reading frame OS=Anolis
0.0063 17.1 14.9 0.1 13.2 0.2 5.5 4 tr|G1KNA6|G1KNA6_ANOCA Zinc finger protein OS=Anolis carolin
------ inclusion threshold ------
0.06 14.0 2.1 0.24 12.1 0.1 3.2 2 tr|G1KVY9|G1KVY9_ANOCA Uncharacterized protein OS=Anolis car
0.2 12.3 4.4 51 4.6 0.0 3.6 2 tr|G1KAM1|G1KAM1_ANOCA Tripartite motif containing 67 OS=Ano
0.22 12.2 1.9 13 6.5 0.5 3.6 3 tr|H9GIS1|H9GIS1_ANOCA Uncharacterized protein OS=Anolis car
2 9.1 5.9 5.6 7.7 5.9 1.8 1 tr|H9GMR4|H9GMR4_ANOCA SH3 domain containing ring finger 1 O
2.5 8.8 9.0 33 5.2 0.2 3.5 2 tr|H9G3X0|H9G3X0_ANOCA Tripartite motif containing 9 OS=Anol
2.8 8.6 5.8 22 5.7 3.0 4.0 2 tr|H9GKF4|H9GKF4_ANOCA Zinc finger and BTB domain containing
3.5 8.3 6.5 38 5.0 0.1 4.1 3 tr|H9GJD9|H9GJD9_ANOCA Uncharacterized protein (Fragment) OS
5.3 7.7 7.8 13 6.5 5.8 2.6 2 tr|H9GKD9|H9GKD9_ANOCA SH3 domain containing ring finger 2 O
Domain annotation for each sequence (and alignments):
>> tr|H9GTE2|H9GTE2_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=trmt112 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.3 0.0 2.2e-18 3.8e-15 1 68 [] 2 114 .. 2 114 .. 0.98
Alignments for each domain:
== domain 1 score: 56.3 bits; conditional E-value: 2.2e-18
BTGGCCC-B-TTTHH.......C-..........................-HHHHHHHHH.TT---.S-SS----S........... CS
Trm112p 1 kllllniLaCpackg.......pL..........................dwealvevaa.lglne.lpkekpedy........... 41
kll++n+L+++ ++g pL +w alve+a+ lg + lp+e+ dy
tr|H9GTE2|H9GTE2_ANOCA 2 KLLTHNMLTSH-VRGvrpgggfPLriqatevkvnnvdfnpeftarmvpkvEWGALVEAAEsLGHRSdLPAEPIPDYesnedflrkvh 87
789********.***9******99*************************************************************** PP
CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 42 ellleldieegeLvCpncgraYpIkdG 68
++l+e++++eg+L Cp++gr +pI +G
tr|H9GTE2|H9GTE2_ANOCA 88 HVLMEVEVVEGVLKCPDTGREFPITKG 114
************************987 PP
>> tr|G1KN07|G1KN07_ANOCA PIGY upstream reading frame OS=Anolis carolinensis OX=28377 GN=PYURF PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.1 0.2 3.9e-11 6.6e-08 2 68 .] 9 47 .. 8 47 .. 0.95
Alignments for each domain:
== domain 1 score: 33.1 bits; conditional E-value: 3.9e-11
TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
ll iL+Cp+ k+pL +++ ++eL++++ g+aYpI dG
tr|G1KN07|G1KN07_ANOCA 9 ASLLQILVCPLSKKPL------------------------R----YEESTNELINEELGIAYPITDG 47
579*************........................5....9********************9 PP
>> tr|G1KNA6|G1KNA6_ANOCA Zinc finger protein OS=Anolis carolinensis OX=28377 GN=PRDM5 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.2 6.2e-05 0.1 41 67 .. 177 212 .. 137 212 .. 0.76
2 ! 6.4 0.5 0.0085 14 10 64 .. 350 414 .. 295 415 .. 0.73
3 ? -2.7 0.0 5.5 9.3e+03 48 63 .. 426 441 .. 422 445 .. 0.82
4 ? 0.6 3.2 0.54 9.1e+02 33 63 .. 542 582 .. 433 586 .. 0.64
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 6.2e-05
S.........CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y.........ellleldieegeLvCpncgraYpIkd 67
+ ++l++ ee e+ C+ncg +p+k+
tr|G1KNA6|G1KNA6_ANOCA 177 AsqeilaehlQTLHQKPSEEKEFKCRNCGKKFPVKQ 212
044444444477889999****************85 PP
== domain 2 score: 6.4 bits; conditional E-value: 0.0085
-TTTHH...C--HHHHHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 10 Cpackg...pLdwealvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgraYp 64
C +c++ + l +v+a + + + +++k++ + +++ ee ++C++c+ ++
tr|G1KNA6|G1KNA6_ANOCA 350 CEVCHKsfkR-----LDQVTAhKIIHSeDKPYKCKLCgkgfahrnvyknH--KKTHSEERPFQCEECKALFR 414
4445444433.....455555556666689999998899*****999773..579************99885 PP
== domain 3 score: -2.7 bits; conditional E-value: 5.5
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ e ++ C +c+ ++
tr|G1KNA6|G1KNA6_ANOCA 426 HNSERTFKCDHCDATF 441
67789999*9999877 PP
== domain 4 score: 0.6 bits; conditional E-value: 0.54
S-SS----S.............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 33 lpkekpedy.............ellleldieegeLvCpncgraY 63
++++ ++ ++++ e ++C c++ +
tr|G1KNA6|G1KNA6_ANOCA 542 EKPYQ---CsecnkafsqkrglDEHMRTHTGEKPFQCDVCDLSF 582
22222...123355566666664446677777777777777766 PP
>> tr|G1KVY9|G1KVY9_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.1 0.00014 0.24 41 68 .] 393 430 .. 360 430 .. 0.65
2 ? -1.3 0.2 2 3.4e+03 56 63 .. 476 483 .. 444 511 .. 0.69
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 0.00014
S.............CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 41 y.............ellleldieegeLvCpncgraYpIkdG 68
e +++ +e ++vC +cg a+ ++++
tr|G1KVY9|G1KVY9_ANOCA 393 CgkcftqkselvehE---KTHATEDSFVCFACGKAFAVRNS 430
355555554443322...589999**************995 PP
== domain 2 score: -1.3 bits; conditional E-value: 2
ETTTTEEE CS
Trm112p 56 CpncgraY 63
C++cgr++
tr|G1KVY9|G1KVY9_ANOCA 476 CSDCGRTF 483
56666655 PP
>> tr|G1KAM1|G1KAM1_ANOCA Tripartite motif containing 67 OS=Anolis carolinensis OX=28377 GN=TRIM67 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.6 0.0 0.03 51 49 63 .. 21 35 .. 8 36 .. 0.87
2 ? 2.9 3.3 0.1 1.7e+02 8 60 .. 169 241 .. 165 321 .. 0.64
Alignments for each domain:
== domain 1 score: 4.6 bits; conditional E-value: 0.03
CCCCEEEETTTTEEE CS
Trm112p 49 ieegeLvCpncgraY 63
++e+eL Cp cg +
tr|G1KAM1|G1KAM1_ANOCA 21 VMEEELKCPVCGSLF 35
699*********988 PP
== domain 2 score: 2.9 bits; conditional E-value: 0.1
-B-TTTHH...............C--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTT CS
Trm112p 8 LaCpackg...............pLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncg 60
L+Cp+c+ +L +ea+v++ + ++ + +++k++ + ++++ ++++C +c+
tr|G1KAM1|G1KAM1_ANOCA 169 LTCPQCHRsasldhrglrgfqrnRL-LEAIVQRYQaARAAASAAAKCQLCdrnppepaaV----MCEQCEVFYCASCQ 241
8999999999666665555555555.7777777776666666666666656667765663....45555555555553 PP
>> tr|H9GIS1|H9GIS1_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=snai2 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.0 0.0 0.2 3.3e+02 41 63 .. 110 137 .. 57 142 .. 0.68
2 ? 6.5 0.5 0.0075 13 43 63 .. 202 222 .. 144 223 .. 0.79
3 ? -0.4 0.0 1.1 1.8e+03 45 63 .. 232 250 .. 224 251 .. 0.79
Alignments for each domain:
== domain 1 score: 2.0 bits; conditional E-value: 0.2
S.........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y.........ellleldieegeLvCpncgraY 63
+ ie ++++C+ c+ +Y
tr|H9GIS1|H9GIS1_ANOCA 110 EeriqsklsdA----HAIEAEKFQCSLCNKTY 137
04445433331....47888999***999998 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.0075
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
++++ e + Cp+c+ra+
tr|H9GIS1|H9GIS1_ANOCA 202 GHIRTHTGEKPFSCPHCNRAF 222
44889999999*********9 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.1
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
l+++ + + +C+nc ++
tr|H9GIS1|H9GIS1_ANOCA 232 LQTHSDVKKYQCKNCSKTF 250
77888888889****8877 PP
>> tr|H9GMR4|H9GMR4_ANOCA SH3 domain containing ring finger 1 OS=Anolis carolinensis OX=28377 GN=SH3RF1 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.7 5.9 0.0033 5.6 3 60 .. 5 53 .. 3 55 .. 0.76
Alignments for each domain:
== domain 1 score: 7.7 bits; conditional E-value: 0.0033
GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+
tr|H9GMR4|H9GMR4_ANOCA 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVSSRNELRCPECR 53
69*************..........12223344444...255599****************8 PP
>> tr|H9G3X0|H9G3X0_ANOCA Tripartite motif containing 9 OS=Anolis carolinensis OX=28377 GN=TRIM9 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.2 0.2 0.019 33 48 64 .. 2 18 .. 1 18 [. 0.88
2 ? 3.1 4.1 0.087 1.5e+02 8 60 .. 148 267 .. 146 269 .. 0.71
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.019
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+++e+eL Cp cg Y+
tr|H9G3X0|H9G3X0_ANOCA 2 EEMEEELKCPVCGSFYR 18
689**********9885 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.087
-B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S...................................... CS
Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy...................................... 41
L+Cp+c+ L +e ++++ + + + l+ +++e++
tr|H9G3X0|H9G3X0_ANOCA 148 LTCPQCHRSLilderglrgfpknrVLEGVIDRYQqSKAAALRCQLCEKApkeatvmceqcdvfycdpcrlrchpprgplakhrllpp 234
899999998888888888888888788888888878888888888888887777666666666666666666666666666666666 PP
..............CHHTTEECCCCEEEETTTT CS
Trm112p 42 ..............ellleldieegeLvCpncg 60
+++ ++ e+ +++C c+
tr|H9G3X0|H9G3X0_ANOCA 235 aqgrvsrrlsprkiSTCTDHELENHSMYCVQCK 267
666666666666666666667777777776665 PP
>> tr|H9GKF4|H9GKF4_ANOCA Zinc finger and BTB domain containing 17 OS=Anolis carolinensis OX=28377 GN=ZBTB17 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 0.0 2 3.4e+03 41 63 .. 222 254 .. 192 255 .. 0.72
2 ? 5.7 3.0 0.013 22 11 63 .. 360 394 .. 259 395 .. 0.83
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 2
S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y............ellleldieegeLvCpncgraY 63
+ ++++ e + C +c a+
tr|H9GKF4|H9GKF4_ANOCA 222 CgkefthtgnfkrH--IRIHTGEKPFSCQECSKAF 254
34445555555333..6788888889999998887 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.013
TTTHHC--HHHHHHHHHTT---S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 11 packgpLdwealvevaalglnelpkekpedy..........ellleldieegeLvCpncgraY 63
p+ ++ l+++i +g L C+ cg +
tr|H9GKF4|H9GKF4_ANOCA 360 PH----------------------------CekkfnqvgnlKAHLKVHIADGPLKCRQCGKQF 394
33............................1344556666666799*************9765 PP
>> tr|H9GJD9|H9GJD9_ANOCA Uncharacterized protein (Fragment) OS=Anolis carolinensis OX=28377 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.8 0.8 0.053 89 47 63 .. 150 166 .. 91 167 .. 0.83
2 ? -2.3 0.0 4.2 7.1e+03 48 64 .. 207 223 .. 196 226 .. 0.78
3 ? 5.0 0.1 0.022 38 24 67 .. 425 450 .. 378 451 .. 0.76
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.053
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
++ e ++C++cgr++
tr|H9GJD9|H9GJD9_ANOCA 150 THTGEKPFICSECGRCF 166
67788999*******99 PP
== domain 2 score: -2.3 bits; conditional E-value: 4.2
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+ e + C +cg ++
tr|H9GJD9|H9GJD9_ANOCA 207 HTGEKPFKCLECGKSFR 223
55667789999*99997 PP
== domain 3 score: 5.0 bits; conditional E-value: 0.022
HHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 24 evaalglnelpkekpedyellleldieegeLvCpncgraYpIkd 67
++ + +++ e ++C +cgr+++ k+
tr|H9GJD9|H9GJD9_ANOCA 425 TRHQ------------------RIHSGEKPFQCLECGRCFRLKQ 450
4443..................478889999*********9886 PP
>> tr|H9GKD9|H9GKD9_ANOCA SH3 domain containing ring finger 2 OS=Anolis carolinensis OX=28377 GN=SH3RF2 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 5.8 0.0076 13 1 60 [. 3 53 .. 3 54 .. 0.69
2 ? 3.4 0.6 0.072 1.2e+02 3 17 .. 42 56 .. 40 86 .. 0.83
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.0076
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
+l l ++L Cp+c g+Ld ++ lp + l ++ +++ eL Cp+c+
tr|H9GKD9|H9GKD9_ANOCA 3 DLALFDMLECPLCLGKLD----------ISAKvLPCQH---TfckPCLQRILKLHKELRCPECR 53
67899************2..........1122233333...255455556889999******97 PP
== domain 2 score: 3.4 bits; conditional E-value: 0.072
GGCCC-B-TTTHHC- CS
Trm112p 3 lllniLaCpackgpL 17
+l+ L Cp c+ p+
tr|H9GKD9|H9GKD9_ANOCA 42 KLHKELRCPECRAPV 56
788889999999987 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 18528 (9796552 residues searched)
Passed MSV filter: 1019 (0.0549978); expected 370.6 (0.02)
Passed bias filter: 698 (0.0376727); expected 370.6 (0.02)
Passed Vit filter: 74 (0.00399396); expected 18.5 (0.001)
Passed Fwd filter: 17 (0.00091753); expected 0.2 (1e-05)
Initial search space (Z): 18528 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.07
# Mc/sec: 9516.65
//
[ok]