# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-15 57.4 0.0 3.3e-15 57.1 0.0 1.1 1 tr|C3ZN06|C3ZN06_BRAFL Uncharacterized protein OS=Branchiost
1.6e-07 32.4 0.0 2.8e-07 31.6 0.0 1.4 1 tr|C3XUG7|C3XUG7_BRAFL Uncharacterized protein (Fragment) OS
------ inclusion threshold ------
0.041 15.1 1.4 3.6 8.9 0.5 3.1 2 tr|C3YTH7|C3YTH7_BRAFL Uncharacterized protein (Fragment) OS
0.042 15.1 1.3 0.65 11.3 0.4 2.6 2 tr|C3YVK7|C3YVK7_BRAFL Uncharacterized protein OS=Branchiost
0.12 13.7 10.1 24 6.3 0.1 5.8 5 tr|C3XUG1|C3XUG1_BRAFL Uncharacterized protein OS=Branchiost
0.24 12.7 8.0 1.3 10.3 0.1 4.3 3 tr|C3Y3Q4|C3Y3Q4_BRAFL Uncharacterized protein OS=Branchiost
0.65 11.3 5.2 1.9 9.7 0.6 3.0 2 tr|C4A0J8|C4A0J8_BRAFL Uncharacterized protein OS=Branchiost
0.85 10.9 8.3 56 5.1 0.0 5.6 5 tr|C3ZBV0|C3ZBV0_BRAFL Uncharacterized protein OS=Branchiost
0.86 10.9 4.1 3.3 9.0 0.0 3.1 2 tr|C3ZVE4|C3ZVE4_BRAFL Uncharacterized protein OS=Branchiost
0.91 10.8 2.8 36 5.7 0.1 3.0 2 tr|C3YGF6|C3YGF6_BRAFL Uncharacterized protein (Fragment) OS
1.6 10.0 14.5 7.5 7.9 0.6 4.5 4 tr|C3Z6K1|C3Z6K1_BRAFL Uncharacterized protein (Fragment) OS
4.8 8.5 9.9 5.6 8.3 0.5 3.4 2 tr|C3ZVG8|C3ZVG8_BRAFL Uncharacterized protein (Fragment) OS
5.7 8.3 5.1 13 7.1 1.1 2.9 2 tr|C3Y7I6|C3Y7I6_BRAFL Uncharacterized protein (Fragment) OS
Domain annotation for each sequence (and alignments):
>> tr|C3ZN06|C3ZN06_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_83415 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.1 0.0 1.5e-18 3.3e-15 2 68 .] 3 112 .. 2 112 .. 0.96
Alignments for each domain:
== domain 1 score: 57.1 bits; conditional E-value: 1.5e-18
TGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHH CS
Trm112p 2 llllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........ell 44
ll++n+L+++ +kg pL +w+alv++a+ g lp+e+ +y ++l
tr|C3ZN06|C3ZN06_BRAFL 3 LLTHNMLTSH-VKGvtngyPLklqaenikvmsvdfnpefvarmipklEWQALVQAAEsIGHLGdLPRELMPEYesneeflkmahHVL 88
79********.********9999***********************************887777****999999************* PP
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
+e++++eg L Cp++gr +pIk+G
tr|C3ZN06|C3ZN06_BRAFL 89 MEVEVIEGNLECPETGRKFPIKNG 112
***********************9 PP
>> tr|C3XUG7|C3XUG7_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_214423 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.6 0.0 1.3e-10 2.8e-07 3 68 .] 6 43 .. 4 43 .. 0.94
Alignments for each domain:
== domain 1 score: 31.6 bits; conditional E-value: 1.3e-10
GGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 3 lllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+l+iL+Cp+ k+pL +d e+ eLv+ + g aYpI +G
tr|C3XUG7|C3XUG7_BRAFL 6 NMLEILVCPLSKKPL------------------------R----YDPEKSELVSDELGVAYPIVNG 43
589************........................6....********************99 PP
>> tr|C3YTH7|C3YTH7_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_145043 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.0 0.074 1.6e+02 48 64 .. 8 24 .. 4 24 .. 0.87
2 ? 8.9 0.5 0.0016 3.6 8 60 .. 50 131 .. 48 141 .. 0.84
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.074
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
d +e++L+Cp c ++++
tr|C3YTH7|C3YTH7_BRAFL 8 DLDEQSLTCPLCMLHFR 24
679*********99985 PP
== domain 2 score: 8.9 bits; conditional E-value: 0.0016
-B-TTTHHC-....................-HHHHHHHHHTT---S-SS----S.........CHHTTEECCCCEEEETTTT CS
Trm112p 8 LaCpackgpL....................dwealvevaalglnelpkekpedy.........ellleldieegeLvCpncg 60
L Cp c++++ d++a+ + a+ g + +p+e + +++++ +e +++C++c+
tr|C3YTH7|C3YTH7_BRAFL 50 LECPTCRTQVslpdqgvdglranvyvnnllDFAAVKKGAGPGHDVVPEEVLKAEkdvskfqrkRYCHKHKNQELVFYCESCN 131
78******5555888888889999999999999999999966666777777766899******7799999999999999997 PP
>> tr|C3YVK7|C3YVK7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_249762 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.32 7e+02 52 62 .. 14 24 .. 7 26 .. 0.62
2 ? 11.3 0.4 0.0003 0.65 8 59 .. 52 127 .. 49 130 .. 0.86
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.32
CEEEETTTTEE CS
Trm112p 52 geLvCpncgra 62
+ L+Cp c ++
tr|C3YVK7|C3YVK7_BRAFL 14 QFLTCPVCVLH 24
55666666555 PP
== domain 2 score: 11.3 bits; conditional E-value: 0.0003
-B-TTTHHC-....................-HHHHHHHHH.TT---.S-SS----S..CHHTTEECCCCEEEETTT CS
Trm112p 8 LaCpackgpL....................dwealvevaa.lglne.lpkekpedy..ellleldieegeLvCpnc 59
L Cp c++++ d++a + a+ g ++ +k ++++ ++l ++++ +LvC++c
tr|C3YVK7|C3YVK7_BRAFL 52 LECPTCRTQVslpdqgvdglranfyvnnllDFAAAKKGAEpGGRSKfHRKRHCDKHkkYELEFYCEVCKTLVCTAC 127
88******5555889999999999999999****************999*****9988556667888888999888 PP
>> tr|C3XUG1|C3XUG1_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_120977 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.1 0.073 1.6e+02 8 59 .. 55 87 .. 50 137 .. 0.64
2 ? 3.6 0.1 0.076 1.7e+02 9 60 .. 241 343 .. 190 345 .. 0.65
3 ? 6.3 0.1 0.011 24 41 60 .. 434 470 .. 403 472 .. 0.71
4 ? 1.4 0.0 0.36 8e+02 8 26 .. 528 546 .. 522 557 .. 0.75
5 ? -1.9 0.0 3.7 8.2e+03 6 14 .. 571 579 .. 566 597 .. 0.80
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.073
-B-TTTHHC-.........-HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTT CS
Trm112p 8 LaCpackgpL.........dwealvevaalglnelpkekpedyellleldieegeLvCpnc 59
++Cp+c +L d l+ ++g + C c
tr|C3XUG1|C3XUG1_BRAFL 55 IVCPICNARLyrktvdrhmD----------------------------LHNDRGGFSCDGC 87
58******994444444440............................5555555555544 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.076
B-TTTHH.C-...................-HHHHHHHHH.TT---.S-SS----S...............................C CS
Trm112p 9 aCpackg.pL...................dwealvevaa.lglne.lpkekpedy...............................e 42
+C+ ck +L d ea ++++ ++ + ++ p+ +
tr|C3XUG1|C3XUG1_BRAFL 241 KCSSCKYeTLsesfldkhvckgaqtamatDPEATADQVKgGANENnITEKEPDIDqnvegetvdntedtetcsvcnveikshslqrH 327
555555554444444444444444444443333333333322222344444443355566666666666666666666666666552 PP
HHTTEECCCCEEEETTTT CS
Trm112p 43 llleldieegeLvCpncg 60
el++ eg + C+ c+
tr|C3XUG1|C3XUG1_BRAFL 328 --KELHDSEGGFKCNQCD 343
..3688999999999885 PP
== domain 3 score: 6.3 bits; conditional E-value: 0.011
S...................CHHTTEECCCCEEEETTTT CS
Trm112p 41 y...................ellleldieegeLvCpncg 60
+ ++l+ +eg + Cp+c+
tr|C3XUG1|C3XUG1_BRAFL 434 TssghccvcgvrlyrksvqrH--MQLHNDEGGFSCPRCD 470
155555556666666666444..99*************6 PP
== domain 4 score: 1.4 bits; conditional E-value: 0.36
-B-TTTHHC--HHHHHHHH CS
Trm112p 8 LaCpackgpLdwealveva 26
L+Cp+c +L+ +al+ +
tr|C3XUG1|C3XUG1_BRAFL 528 LVCPLCGVKLQSSALISHM 546
8999999998777776655 PP
== domain 5 score: -1.9 bits; conditional E-value: 3.7
CC-B-TTTH CS
Trm112p 6 niLaCpack 14
+++Cp+c
tr|C3XUG1|C3XUG1_BRAFL 571 PFVQCPLCQ 579
6999**996 PP
>> tr|C3Y3Q4|C3Y3Q4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_85515 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 3.5 7.7e+03 7 18 .. 486 502 .. 484 584 .. 0.58
2 ? 10.3 0.1 0.00061 1.3 33 64 .. 921 948 .. 887 950 .. 0.74
3 ? 2.3 2.4 0.18 4e+02 41 60 .. 1098 1152 .. 1042 1154 .. 0.75
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 3.5
C-B-TTTHHC-......- CS
Trm112p 7 iLaCpackgpL......d 18
+L C ++gpL +
tr|C3Y3Q4|C3Y3Q4_BRAFL 486 LLECE-DHGPLpiptrpR 502
57888.888884444440 PP
== domain 2 score: 10.3 bits; conditional E-value: 0.00061
S-SS----SCHHTTEECCCCEEEETTTTEEEE CS
Trm112p 33 lpkekpedyellleldieegeLvCpncgraYp 64
pke+ e ++l+i +g++ Cp+c+++++
tr|C3Y3Q4|C3Y3Q4_BRAFL 921 DPKELAE----HMKLHIPDGSFKCPDCNQVFR 948
3444444....478***************996 PP
== domain 3 score: 2.3 bits; conditional E-value: 0.18
S...................................CHHTTEECCCCEEEETTTT CS
Trm112p 41 y...................................ellleldieegeLvCpncg 60
+ e+ l++++ +ge++C++c
tr|C3Y3Q4|C3Y3Q4_BRAFL 1098 QtmlkthlakhmksdhniellqcsfcryfwgsredmETHLQTCKYKGEFQCEECS 1152
4444444555455555555666666666677777777779999999******995 PP
>> tr|C4A0J8|C4A0J8_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_133091 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.6 0.00088 1.9 13 63 .. 34 103 .. 6 104 .. 0.83
2 ? 2.5 0.3 0.16 3.5e+02 34 63 .. 176 224 .. 110 227 .. 0.57
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.00088
THHC-.......-HHHHHHHHH.TT---.S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 13 ckgpL.......dwealvevaa.lglne.lpkekpedy..........ellleldieegeLvCpncgraY 63
ck pL +++ l + ++ ++ + +++k+++ + ++++ +e + C++cg +
tr|C4A0J8|C4A0J8_BRAFL 34 CKRPLrcgkcskQFSWLCNLKRhMRTHTgERPYKCDKCskqfsdqgnmKSHMRTHTDEKPFKCEECGNQF 103
666778888888888888888889999999999999999*********5569**************9765 PP
== domain 2 score: 2.5 bits; conditional E-value: 0.16
-SS----S...................CHHTTEECCCCEEEETTTTEEE CS
Trm112p 34 pkekpedy...................ellleldieegeLvCpncgraY 63
+++++++ + + ++ e +C++c r +
tr|C4A0J8|C4A0J8_BRAFL 176 KPYRCDECskqfnvrsggrqfsrldnlKSHVMTHTGEKPYQCKECSRSF 224
3333333344444444444444444442234455555666677777766 PP
>> tr|C3ZBV0|C3ZBV0_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65180 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.0 0.025 56 50 63 .. 201 214 .. 150 215 .. 0.75
2 ? 3.0 0.0 0.11 2.5e+02 41 64 .. 709 745 .. 649 746 .. 0.72
3 ? -1.0 0.1 1.9 4.3e+03 10 63 .. 826 883 .. 813 886 .. 0.65
4 ? 1.3 1.3 0.37 8.1e+02 48 61 .. 1050 1063 .. 909 1066 .. 0.68
5 ? 0.8 0.1 0.53 1.2e+03 4 13 .. 1052 1061 .. 1049 1090 .. 0.81
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.025
CCCEEEETTTTEEE CS
Trm112p 50 eegeLvCpncgraY 63
+g+LvC +c+r +
tr|C3ZBV0|C3ZBV0_BRAFL 201 SDGKLVCDKCNRMF 214
45**********98 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.11
S.............CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 41 y.............ellleldieegeLvCpncgraYp 64
++ +l+++ g + C+ cgr ++
tr|C3ZBV0|C3ZBV0_BRAFL 709 DtlmekleyrkmslDVYNKLKVLYGDMECRYCGRFFY 745
055555555566664456788899**********996 PP
== domain 3 score: -1.0 bits; conditional E-value: 1.9
-TTTHHC--HHHHHHHHH.TT---.S-SS----S......CHHTTEECCCCEEEETTTTEEE CS
Trm112p 10 CpackgpLdwealvevaa.lglne.lpkekpedy......ellleldieegeLvCpncgraY 63
Cpac + e+a +++++ p+ + e++ + l+ + + ++ Cp cg +
tr|C3ZBV0|C3ZBV0_BRAFL 826 CPACSETF----TKERAIkVHIKKhHPAMTLEEIslvlgkRAQLKSAMGQRAFKCPYCGKLF 883
67666665....55555555666655665666556666664445556666777888888776 PP
== domain 4 score: 1.3 bits; conditional E-value: 0.37
ECCCCEEEETTTTE CS
Trm112p 48 dieegeLvCpncgr 61
++ + L Cp+c+
tr|C3ZBV0|C3ZBV0_BRAFL 1050 EMHVEMLKCPECDF 1063
22236677777765 PP
== domain 5 score: 0.8 bits; conditional E-value: 0.53
GCCC-B-TTT CS
Trm112p 4 llniLaCpac 13
+ ++L+Cp c
tr|C3ZBV0|C3ZBV0_BRAFL 1052 HVEMLKCPEC 1061
5677888877 PP
>> tr|C3ZVE4|C3ZVE4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_100134 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.0 0.0 0.0015 3.3 17 63 .. 197 262 .. 125 266 .. 0.85
2 ? 0.3 2.2 0.78 1.7e+03 45 63 .. 328 346 .. 270 377 .. 0.60
Alignments for each domain:
== domain 1 score: 9.0 bits; conditional E-value: 0.0015
-.......-HHHHHHHHH.TT---.S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 17 L.......dwealvevaa.lglne.lpkekpedy..........ellleldieegeLvCpncgraY 63
L +++ l + ++ ++ + +++k+++ + ++++ +e + C++cg +
tr|C3ZVE4|C3ZVE4_BRAFL 197 LrcedcskQYSRLCNLKRhMRTHTgERPYKCDKCskqfsdqgnmKSHMRTHTDEKPFKCEECGKQF 262
355555556666677788889999999999999999********5569**************9655 PP
== domain 2 score: 0.3 bits; conditional E-value: 0.78
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
++++ e C++cgr +
tr|C3ZVE4|C3ZVE4_BRAFL 328 MRTHTGEKPYRCEECGRQF 346
3444444444444444443 PP
>> tr|C3YGF6|C3YGF6_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_159038 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.1 0.016 36 43 63 .. 21 41 .. 1 42 [. 0.77
2 ? 4.1 0.4 0.05 1.1e+02 41 63 .. 119 153 .. 47 154 .. 0.75
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.016
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
le++++e + C cg a+
tr|C3YGF6|C3YGF6_BRAFL 21 IHLETHRTERNFLCDTCGKAF 41
4499**************999 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.05
S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y............ellleldieegeLvCpncgraY 63
+ ++ ++ + ++g + C+ cg ++
tr|C3YGF6|C3YGF6_BRAFL 119 QgctwrfksetmcKAHIRGHTTQGRFKCSVCGYVF 153
35555555555564457778888999999999888 PP
>> tr|C3Z6K1|C3Z6K1_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_232936 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.9 0.2 0.12 2.6e+02 42 63 .. 47 66 .. 6 67 .. 0.73
2 ? 7.9 0.6 0.0034 7.5 34 61 .. 96 119 .. 75 122 .. 0.72
3 ? 3.9 1.0 0.061 1.3e+02 8 59 .. 112 145 .. 112 152 .. 0.81
4 ? 5.4 0.3 0.02 44 41 60 .. 191 230 .. 153 232 .. 0.66
Alignments for each domain:
== domain 1 score: 2.9 bits; conditional E-value: 0.12
CHHTTEECCCCEEEETTTTEEE CS
Trm112p 42 ellleldieegeLvCpncgraY 63
+ l+++ + + C +cg+ +
tr|C3Z6K1|C3Z6K1_BRAFL 47 H--LKTHTGHKPFMCDKCGHRF 66
4..78899999999*****998 PP
== domain 2 score: 7.9 bits; conditional E-value: 0.0034
-SS----SCHHTTEECCCCEEEETTTTE CS
Trm112p 34 pkekpedyellleldieegeLvCpncgr 61
p+++ + l++++ee L Cp+c++
tr|C3Z6K1|C3Z6K1_BRAFL 96 PSYL----AAHLRTHDEEKPLKCPDCDH 119
3333....34478*************97 PP
== domain 3 score: 3.9 bits; conditional E-value: 0.061
-B-TTTHH......C--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTT CS
Trm112p 8 LaCpackg......pLdwealvevaalglnelpkekpedyellleldieegeLvCpnc 59
L+Cp c + +L +l ++++ ee + C++c
tr|C3Z6K1|C3Z6K1_BRAFL 112 LKCPDCDHeavgrrEL------------------------QLHMKTHSEEKLFACERC 145
7888888877777755........................677999*****9999999 PP
== domain 4 score: 5.4 bits; conditional E-value: 0.02
S................CHHTTEECCC....CEEEETTTT CS
Trm112p 41 y................ellleldiee....geLvCpncg 60
e lle+++++ g LvC++c+
tr|C3Z6K1|C3Z6K1_BRAFL 191 TgekpypctvcgrscatEYLLETHMKShqpkGPLVCKDCN 230
0333355555677788855666666666666********7 PP
>> tr|C3ZVG8|C3ZVG8_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_238215 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.3 0.5 0.0025 5.6 8 63 .. 27 92 .. 21 93 .. 0.79
2 ? 1.7 3.4 0.29 6.3e+02 41 63 .. 144 176 .. 95 207 .. 0.55
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.0025
-B-TTTHH...C--HHHHHHHHH.TT---.S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 8 LaCpackg...pLdwealvevaa.lglne.lpkekpedy..........ellleldieegeLvCpncgraY 63
L C c + + l + ++ ++ + +++k+++ + ++++ ee + C++cg +
tr|C3ZVG8|C3ZVG8_BRAFL 27 LRCEECSKqfsR-----LGNLKRhMRTHTgERPYKCDKCskqfsdqgsmKSHMRTHTEEKPFKCEDCGNQF 92
566666664552.....3444677777777899999999999*******55699*************9765 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.29
S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y............ellleldieegeLvCpncgraY 63
+ ++++ e C++cgr +
tr|C3ZVG8|C3ZVG8_BRAFL 144 CskqfsemsslkrH--MRTHTGEKPYKCEECGRQF 176
34444444444332..4445555555555555544 PP
>> tr|C3Y7I6|C3Y7I6_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_199476 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.1 1.1 0.0059 13 32 63 .. 27 69 .. 4 70 .. 0.68
2 ? 1.1 0.2 0.44 9.8e+02 55 63 .. 117 125 .. 77 126 .. 0.84
Alignments for each domain:
== domain 1 score: 7.1 bits; conditional E-value: 0.0059
-.S-SS----S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 32 e.lpkekpedy............ellleldieegeLvCpncgraY 63
+ +++++++ + ++++ e + C+ cgra+
tr|C3Y7I6|C3Y7I6_BRAFL 27 TgEKPYMCDRCgmrffekpkmedH--IRTHTGEKPFKCKVCGRAF 69
336666777668888888888444..899***************9 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.44
EETTTTEEE CS
Trm112p 55 vCpncgraY 63
C+ cgra+
tr|C3Y7I6|C3Y7I6_BRAFL 117 ACETCGRAF 125
599****99 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 1308 (0.0458272); expected 570.8 (0.02)
Passed bias filter: 908 (0.0318128); expected 570.8 (0.02)
Passed Vit filter: 94 (0.00329339); expected 28.5 (0.001)
Passed Fwd filter: 18 (0.00063065); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.09
# Mc/sec: 10009.67
//
[ok]