# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-16 61.2 0.0 1.4e-16 61.0 0.0 1.1 1 sp|O45241|TR112_CAEEL Multifunctional methyltransferase sub
------ inclusion threshold ------
0.13 13.0 0.1 0.45 11.3 0.1 2.1 1 tr|G5EGN3|G5EGN3_CAEEL Erythroid-Like Transcription factor f
0.63 10.8 3.8 0.71 10.6 1.1 2.6 2 tr|Q9N3T6|Q9N3T6_CAEEL Uncharacterized protein OS=Caenorhabd
2.8 8.7 9.1 30 5.4 0.0 4.0 3 tr|O45103|O45103_CAEEL SNAIl family zinc finger 2 transcript
Domain annotation for each sequence (and alignments):
>> sp|O45241|TR112_CAEEL Multifunctional methyltransferase subunit TRM112-like protein OS=Caenorhabditis elegans OX=623
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.0 0.0 2.8e-20 1.4e-16 1 68 [] 2 114 .. 2 114 .. 0.98
Alignments for each domain:
== domain 1 score: 61.0 bits; conditional E-value: 2.8e-20
BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S............CH CS
Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy............el 43
kl+++n++++ + k+ pL ++eal+ +aa +++++ +p+ekpe++ +l
sp|O45241|TR112_CAEEL 2 KLFVHNFMSSRFLKNvtvgyPLnlvvkqfvekdiefdrdntivmldriQYEALIVAAAaVNQSDrIPREKPEKWdeltdeqlrvfhHL 89
6889****************9999**************************************************************** PP
HTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 44 lleldieegeLvCpncgraYpIkdG 68
l+++d+++geL+Cp+++ ++pI+dG
sp|O45241|TR112_CAEEL 90 LMNIDVIDGELICPETKTVFPIRDG 114
************************9 PP
>> tr|G5EGN3|G5EGN3_CAEEL Erythroid-Like Transcription factor family OS=Caenorhabditis elegans OX=6239 GN=elt-6 PE=1 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.1 8.9e-05 0.45 48 64 .. 278 294 .. 182 297 .. 0.84
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 8.9e-05
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
++eg+LvC++cg+ Y+
tr|G5EGN3|G5EGN3_CAEEL 278 RDLEGKLVCNACGLYYR 294
5789***********97 PP
>> tr|Q9N3T6|Q9N3T6_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y47G6A.14 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.6 1.1 0.00014 0.71 10 59 .. 56 115 .. 6 121 .. 0.81
2 ? -1.4 0.1 0.8 4e+03 47 59 .. 278 290 .. 221 296 .. 0.71
Alignments for each domain:
== domain 1 score: 10.6 bits; conditional E-value: 0.00014
-TTTHH...........C--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTT CS
Trm112p 10 Cpackg...........pLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpnc 59
Cp c+ L +++++ ++ +++kp ++ + + ++d e+ +vC+nc
tr|Q9N3T6|Q9N3T6_CAEEL 56 CPTCRAvvskekrtknfAL-----TNAVTMIQKLrEKPKKPANAvdcTQCTKYDNESDMFVCRNC 115
7777777777766554433.....3333355555566666666688988**************** PP
== domain 2 score: -1.4 bits; conditional E-value: 0.8
EECCCCEEEETTT CS
Trm112p 47 ldieegeLvCpnc 59
+++ eL+C++c
tr|Q9N3T6|Q9N3T6_CAEEL 278 PVEKIFELTCSEC 290
3344457777777 PP
>> tr|O45103|O45103_CAEEL SNAIl family zinc finger 2 transcription factor homolog OS=Caenorhabditis elegans OX=6239 GN=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.4 0.0 0.0059 30 49 63 .. 36 50 .. 11 51 .. 0.82
2 ? 1.5 0.1 0.098 4.9e+02 55 64 .. 71 80 .. 59 80 .. 0.74
3 ? -1.2 7.2 0.7 3.5e+03 10 63 .. 72 133 .. 71 162 .. 0.64
Alignments for each domain:
== domain 1 score: 5.4 bits; conditional E-value: 0.0059
CCCCEEEETTTTEEE CS
Trm112p 49 ieegeLvCpncgraY 63
++++LvC c+ +Y
tr|O45103|O45103_CAEEL 36 LDNQKLVCQFCKKTY 50
5789********999 PP
== domain 2 score: 1.5 bits; conditional E-value: 0.098
EETTTTEEEE CS
Trm112p 55 vCpncgraYp 64
Cp+c+ +Y+
tr|O45103|O45103_CAEEL 71 SCPHCKKVYR 80
4999999995 PP
== domain 3 score: -1.2 bits; conditional E-value: 0.7
-TTTHH......C--HHHHHHHHHTT---S-SS----S.........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 10 Cpackg......pLdwealvevaalglnelpkekpedy.........ellleldieegeLvCpncgraY 63
Cp+ck+ L +++l+ +lp ++ + l+++ e + C+ cgr++
tr|O45103|O45103_CAEEL 72 CPHCKKvyrspgAL-------KMHLKTHSLPCVCNDCGksfsrpwllKGHLRTHTGEKPFGCEFCGRCF 133
77777776666655.......111222233333333336677777774447777777788888888877 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 669 (0.0334366); expected 400.2 (0.02)
Passed bias filter: 533 (0.0266393); expected 400.2 (0.02)
Passed Vit filter: 46 (0.00229908); expected 20.0 (0.001)
Passed Fwd filter: 4 (0.00019992); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.06
# Mc/sec: 9326.45
//
[ok]