# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-15 56.6 0.0 3.3e-15 56.3 0.0 1.1 1 tr|H2Y026|H2Y026_CIOIN multifunctional methyltransferase sub
------ inclusion threshold ------
0.16 12.5 8.6 7.5 7.1 0.1 4.3 4 tr|F6S5T2|F6S5T2_CIOIN Uncharacterized protein OS=Ciona inte
0.36 11.3 4.7 0.93 10.0 4.7 1.7 1 tr|F6UW73|F6UW73_CIOIN Uncharacterized protein OS=Ciona inte
0.41 11.2 4.3 2.3 8.7 0.3 3.1 3 tr|F6RLZ7|F6RLZ7_CIOIN Uncharacterized protein OS=Ciona inte
Domain annotation for each sequence (and alignments):
>> tr|H2Y026|H2Y026_CIOIN multifunctional methyltransferase subunit TRM112-like protein OS=Ciona intestinalis OX=7719 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.3 0.0 7.9e-19 3.3e-15 2 68 .] 11 120 .. 10 120 .. 0.98
Alignments for each domain:
== domain 1 score: 56.3 bits; conditional E-value: 7.9e-19
TGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHH CS
Trm112p 2 llllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........ell 44
l ++n+L+++ +kg pL +w+al ++++ g ++ lp+e p+dy ++l
tr|H2Y026|H2Y026_CIOIN 11 LITHNMLTSH-VKGvkngyPLvikaedikeqetdfnpdfisrmitriEWPALTKAMEmIGHTDqLPEEVPKDYetnndflkqahHAL 96
689*******.**************************************************************************** PP
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
+e+++++g+L+Cp+ gr +pI +G
tr|H2Y026|H2Y026_CIOIN 97 MEIEVITGSLTCPESGREFPIANG 120
*********************998 PP
>> tr|F6S5T2|F6S5T2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=zf(c2h2)-116 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.2 0.3 0.0035 15 26 63 .. 92 134 .. 71 136 .. 0.87
2 ? 1.2 0.1 0.12 5.2e+02 47 60 .. 348 361 .. 308 363 .. 0.75
3 ? 7.1 0.1 0.0018 7.5 41 67 .. 423 457 .. 391 458 .. 0.70
4 ? -1.9 0.1 1.2 4.9e+03 15 40 .. 508 535 .. 498 566 .. 0.56
Alignments for each domain:
== domain 1 score: 6.2 bits; conditional E-value: 0.0035
HH.TT---S-SS----SCHHTTEECCC....CEEEETTTTEEE CS
Trm112p 26 aa.lglnelpkekpedyellleldiee....geLvCpncgraY 63
+ +++++l k+++++ + + el ++ +++C c+r +
tr|F6S5T2|F6S5T2_CIOIN 92 NTnAEITSLEKQQCSKTDSCTELASDNlkfsDSMQCQVCKRKF 134
455789999********88888888888889**********98 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.12
EECCCCEEEETTTT CS
Trm112p 47 ldieegeLvCpncg 60
+++ g LvC++c
tr|F6S5T2|F6S5T2_CIOIN 348 KHKKPGDLVCRSCS 361
366679******95 PP
== domain 3 score: 7.1 bits; conditional E-value: 0.0018
S........CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y........ellleldieegeLvCpncgraYpIkd 67
+ + l ++++++ + Cp c+ ++ I+d
tr|F6S5T2|F6S5T2_CIOIN 423 ItnlkenlqKHSLTHQEKDQPFMCPICRKTFEIRD 457
0455555552346679999***************9 PP
== domain 4 score: -1.9 bits; conditional E-value: 1.2
H.....C--HHHHHHHHH.TT---S-SS---- CS
Trm112p 15 g.....pLdwealvevaa.lglnelpkekped 40
+L l ++ +++n +pk+ ++
tr|F6S5T2|F6S5T2_CIOIN 508 YkgrtkQL----LQSHMKcRHNNHVPKNESTS 535
44455555....55566666677755554443 PP
>> tr|F6UW73|F6UW73_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.0 4.7 0.00022 0.93 6 60 .. 8 53 .. 4 55 .. 0.86
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 0.00022
CC-B-TTTHHC--HHHHHHHHHTT---.S-SS----SCHHTTEECCCCEEEETTTT CS
Trm112p 6 niLaCpackgpLdwealvevaalglne.lpkekpedyellleldieegeLvCpncg 60
++L C++c +pL ++n+ lp + + + + l+ +++ + eL Cp+c+
tr|F6UW73|F6UW73_CIOIN 8 DLLECSVCLKPL----------DQQNKvLPCQHTFCKSCLFSIVRSHKELRCPECR 53
79**********..........46677788887777799****************8 PP
>> tr|F6RLZ7|F6RLZ7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=zf(c2h2)-41 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.0 2.8 1.2e+04 10 37 .. 123 149 .. 122 165 .. 0.51
2 ? 8.7 0.3 0.00056 2.3 10 66 .. 242 306 .. 241 308 .. 0.76
3 ? 2.6 0.1 0.044 1.9e+02 46 64 .. 407 425 .. 372 425 .. 0.60
Alignments for each domain:
== domain 1 score: -3.1 bits; conditional E-value: 2.8
-TTTHHC--HHHHHHHHHTT---.S-SS- CS
Trm112p 10 CpackgpLdwealvevaalglne.lpkek 37
C +g L + l ++ ++++ l+k++
tr|F6RLZ7|F6RLZ7_CIOIN 123 CTRERGDL-MNLLMHQS-ANNAAnLQKQN 149
55556655.22222222.33433355544 PP
== domain 2 score: 8.7 bits; conditional E-value: 0.00056
-TTTHH....C--HHHHHHHHHTT---S-SS----S.......CHHTTEECCC.CEEEETTTTEEEEEE CS
Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpedy.......ellleldiee.geLvCpncgraYpIk 66
C++c pLd+++ + a e ++++e + l+++++++ eL+C+ cg+ + +
tr|F6RLZ7|F6RLZ7_CIOIN 242 CSVCGAvllnPLDLQSHMQSHA----EASMYRCEICglhfkfqTNLFKHKKLHnSELICHICGLEFKVV 306
8888888888886666666665....55666666668889999778999998879**********9986 PP
== domain 3 score: 2.6 bits; conditional E-value: 0.044
TEECCCCEEEETTTTEEEE CS
Trm112p 46 eldieegeLvCpncgraYp 64
+ +eg + Cp cg a++
tr|F6RLZ7|F6RLZ7_CIOIN 407 DMRYIEGGFDCPVCGKAFR 425
456689999******9995 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 586 (0.0351361); expected 333.6 (0.02)
Passed bias filter: 437 (0.0262022); expected 333.6 (0.02)
Passed Vit filter: 45 (0.00269817); expected 16.7 (0.001)
Passed Fwd filter: 5 (0.000299796); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.03
# Mc/sec: 12173.17
//
[ok]