# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-10 40.6 0.0 3.3e-10 39.9 0.0 1.4 1 sp|Q54N57|TR112_DICDI Multifunctional methyltransferase sub
------ inclusion threshold ------
5.8 7.1 7.2 15 5.8 0.1 3.3 3 tr|Q54EY5|Q54EY5_DICDI LIM domain protein OS=Dictyostelium d
Domain annotation for each sequence (and alignments):
>> sp|Q54N57|TR112_DICDI Multifunctional methyltransferase subunit TRM112-like protein OS=Dictyostelium discoideum OX=4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.9 0.0 5.2e-14 3.3e-10 2 68 .] 3 111 .. 2 111 .. 0.86
Alignments for each domain:
== domain 1 score: 39.9 bits; conditional E-value: 5.2e-14
TGGCCC-B-TTTHH......C-..........................-HHHHHHHHH.TT---.S-SS----S.........CHHTT CS
Trm112p 2 llllniLaCpackg......pL..........................dwealvevaa.lglne.lpkekpedy.........ellle 46
l++n++aC k+ pL dw + e + ++++ l +k + +ll +
sp|Q54N57|TR112_DICDI 3 ILTHNMMACT-KKQcmgkgfPLkvesteqivleqefnyeftkniypklDWLGIAEISIkFNIPIqLDTTKHSLEdeeflktlhNLLCN 89
58********.999999***998888888888888888888888888888888888887777776666666666999******9**** PP
EECCCCEEEETTTTEEEEEETT CS
Trm112p 47 ldieegeLvCpncgraYpIkdG 68
l++++g+L+Cpnc+r+YpI++G
sp|Q54N57|TR112_DICDI 90 LKVITGSLTCPNCQRVYPIDKG 111
*******************998 PP
>> tr|Q54EY5|Q54EY5_DICDI LIM domain protein OS=Dictyostelium discoideum OX=44689 GN=limD PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.8 0.1 0.0024 15 41 60 .. 496 524 .. 448 525 .. 0.73
2 ? -0.1 0.3 0.16 1e+03 51 64 .. 600 613 .. 578 616 .. 0.71
3 ? 3.1 0.3 0.016 1e+02 41 64 .. 644 680 .. 626 680 .. 0.70
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.0024
S............CHHTTEECCCCEEEETTTT CS
Trm112p 41 y............ellleldieegeLvCpncg 60
+ld e+geLvC +cg
tr|Q54EY5|Q54EY5_DICDI 496 ShqnssnslnkspR---KLDGENGELVCARCG 524
04566666664441...59999*********8 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.16
CCEEEETTTTEEEE CS
Trm112p 51 egeLvCpncgraYp 64
++ +vC+nc+ +p
tr|Q54EY5|Q54EY5_DICDI 600 SECFVCSNCHSSFP 613
56689999999998 PP
== domain 3 score: 3.1 bits; conditional E-value: 0.016
S.............CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 41 y.............ellleldieegeLvCpncgraYp 64
+l +++ +vC+ c+ ++p
tr|Q54EY5|Q54EY5_DICDI 644 ChqeidsksdgvikVLGSKYHNNGKCFVCRGCQTVFP 680
34555555556676444579999999**********9 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 12739 (6856946 residues searched)
Passed MSV filter: 385 (0.0302222); expected 254.8 (0.02)
Passed bias filter: 249 (0.0195463); expected 254.8 (0.02)
Passed Vit filter: 16 (0.00125599); expected 12.7 (0.001)
Passed Fwd filter: 2 (0.000156998); expected 0.1 (1e-05)
Initial search space (Z): 12739 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.05
# Mc/sec: 9325.45
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