# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-09 36.4 0.2 5.9e-08 33.4 0.1 2.3 2 tr|F6RDY8|F6RDY8_MONDO Uncharacterized protein OS=Monodelphi
7e-09 36.4 0.2 5.9e-08 33.4 0.1 2.3 2 tr|F7D710|F7D710_MONDO Uncharacterized protein OS=Monodelphi
0.00024 21.8 36.9 68 4.4 0.0 13.6 6 tr|F6V2E5|F6V2E5_MONDO Uncharacterized protein OS=Monodelphi
0.004 17.9 12.4 1.7e+02 3.1 0.6 6.5 2 tr|F7F066|F7F066_MONDO Uncharacterized protein OS=Monodelphi
0.0057 17.4 14.2 0.25 12.2 0.3 5.5 5 tr|F7GB24|F7GB24_MONDO Zinc finger protein OS=Monodelphis do
------ inclusion threshold ------
0.013 16.2 0.2 1.7 9.5 0.1 2.3 2 tr|H9H938|H9H938_MONDO Uncharacterized protein OS=Monodelphi
0.12 13.2 0.2 0.29 12.0 0.2 1.7 1 tr|F7GHV3|F7GHV3_MONDO Deltex E3 ubiquitin ligase 4 OS=Monod
0.19 12.5 25.8 20 6.1 0.4 8.7 6 tr|F6XH11|F6XH11_MONDO Uncharacterized protein OS=Monodelphi
0.24 12.3 8.3 4.7 8.1 0.6 3.7 3 tr|F6STE0|F6STE0_MONDO Uncharacterized protein OS=Monodelphi
0.25 12.2 6.7 9.2 7.2 2.8 3.7 3 tr|H9H697|H9H697_MONDO Uncharacterized protein (Fragment) OS
0.38 11.6 2.2 15 6.5 0.5 3.5 3 tr|F6TA30|F6TA30_MONDO Snail family transcriptional represso
1.4 9.7 35.2 0.89 10.4 0.3 10.2 6 tr|F6V0G1|F6V0G1_MONDO Uncharacterized protein OS=Monodelphi
2.6 8.9 8.5 36 5.3 0.2 3.6 2 tr|F7C2Z3|F7C2Z3_MONDO Tripartite motif containing 9 OS=Mono
5.2 8.0 5.5 14 6.5 5.5 1.8 1 tr|F6TD90|F6TD90_MONDO SH3 domain containing ring finger 1 O
6.5 7.7 18.6 5.3e+02 1.5 0.3 7.2 1 tr|H9H6F6|H9H6F6_MONDO Uncharacterized protein OS=Monodelphi
9.1 7.2 25.2 13 6.7 1.1 8.3 7 tr|F6U2N3|F6U2N3_MONDO Uncharacterized protein OS=Monodelphi
Domain annotation for each sequence (and alignments):
>> tr|F6RDY8|F6RDY8_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=PYURF PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.0 1.1 1.5e+03 14 27 .. 16 29 .. 1 42 [. 0.64
2 ! 33.4 0.1 4.5e-11 5.9e-08 1 68 [] 52 91 .. 52 91 .. 0.96
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 1.1
HHC--HHHHHHHHH CS
Trm112p 14 kgpLdwealvevaa 27
++pL w++ + ++
tr|F6RDY8|F6RDY8_MONDO 16 RQPLAWQVGTKGVH 29
44999998777776 PP
== domain 2 score: 33.4 bits; conditional E-value: 4.5e-11
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
++ ll++L+Cp+ k+pL +++ ++eL++++ g+aYpI dG
tr|F6RDY8|F6RDY8_MONDO 52 DPALLDFLVCPLSKKPL------------------------R----YEMSTNELINEELGIAYPIIDG 91
678**************........................5....9********************9 PP
>> tr|F7D710|F7D710_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=LOC103103239 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.0 1.1 1.4e+03 14 27 .. 16 29 .. 1 42 [. 0.64
2 ! 33.4 0.1 4.5e-11 5.9e-08 1 68 [] 52 91 .. 52 91 .. 0.96
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 1.1
HHC--HHHHHHHHH CS
Trm112p 14 kgpLdwealvevaa 27
++pL w++ e ++
tr|F7D710|F7D710_MONDO 16 RQPLAWQVGTEGVH 29
44999998777776 PP
== domain 2 score: 33.4 bits; conditional E-value: 4.5e-11
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
++ ll++L+Cp+ k+pL +++ ++eL++++ g+aYpI dG
tr|F7D710|F7D710_MONDO 52 DPALLDFLVCPLSKKPL------------------------R----YEMSTNELINEELGIAYPIIDG 91
678**************........................5....9********************9 PP
>> tr|F6V2E5|F6V2E5_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.1 0.37 4.9e+02 47 63 .. 244 260 .. 115 291 .. 0.65
2 ? 4.4 0.0 0.051 68 10 63 .. 281 400 .. 279 401 .. 0.75
3 ? 2.0 0.3 0.29 3.9e+02 45 65 .. 438 458 .. 408 460 .. 0.77
4 ? -2.7 0.0 8 1.1e+04 53 64 .. 698 709 .. 691 712 .. 0.79
5 ? 4.2 2.4 0.06 79 9 64 .. 756 821 .. 700 824 .. 0.82
6 ? 3.1 5.1 0.13 1.7e+02 10 65 .. 897 962 .. 895 1132 .. 0.83
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.37
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
l+ e + C++cg ++
tr|F6V2E5|F6V2E5_MONDO 244 LHSREKPFSCSECGKIF 260
44445555555555444 PP
== domain 2 score: 4.4 bits; conditional E-value: 0.051
-TTTHH......C-.............................-HHHHHHHHH.TT---S-SS----S................... CS
Trm112p 10 Cpackg......pL.............................dwealvevaa.lglnelpkekpedy................... 41
Cp c++ L d++++ +a+ + ++ ++ ++++
tr|F6V2E5|F6V2E5_MONDO 281 CPRCHKsfyrktSLkfhqnlhdeqmpfsgsecgkwfscqssftDYSSVHATAKpFPCPKCDRKFCSKRslkthlrlhsgenpypcge 367
888888666555336666667777788888888888888888888888888876666655555555558888888888888888888 PP
...........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 42 ...........ellleldieegeLvCpncgraY 63
++ ++++ e ++Cp+c+ +
tr|F6V2E5|F6V2E5_MONDO 368 cdktfthqsklTEHFRVHSGEKPFQCPECDKSF 400
889999999996669999999********9877 PP
== domain 3 score: 2.0 bits; conditional E-value: 0.29
TTEECCCCEEEETTTTEEEEE CS
Trm112p 45 leldieegeLvCpncgraYpI 65
l l+ e ++Cp+c++ ++
tr|F6V2E5|F6V2E5_MONDO 438 LTLHTGEKPFQCPECDQSFRL 458
55788889999****999975 PP
== domain 4 score: -2.7 bits; conditional E-value: 8
EEEETTTTEEEE CS
Trm112p 53 eLvCpncgraYp 64
++Cp+c+ ++
tr|F6V2E5|F6V2E5_MONDO 698 PFQCPDCDKSFR 709
579****98885 PP
== domain 5 score: 4.2 bits; conditional E-value: 0.06
B-TTTHH..C--HHHHHHHHHTT---.S-SS----S..........CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 9 aCpackg..pLdwealvevaalglne.lpkekpedy..........ellleldieegeLvCpncgraYp 64
+Cp ck+ +L +a+ + a+lgl + ++ ++d ++ ++++ e +Cp+c+ ++
tr|F6V2E5|F6V2E5_MONDO 756 QCPECKKsfRL--KAVMK-AHLGLHSrERPFSCSDCgkgftqqyklTEHIRVHSGEKPYQCPECDKKFR 821
59999996666..44444.44677777777777777899999989966688999999999999988887 PP
== domain 6 score: 3.1 bits; conditional E-value: 0.13
-TTTHH..C--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTTEEEEE CS
Trm112p 10 Cpackg..pLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncgraYpI 65
Cp ck+ L +a+ ++ + l+ +e p + +++ + ++++ e + C++c+ ++
tr|F6V2E5|F6V2E5_MONDO 897 CPECKKgfHL--KAVMKAHQrLHSKERPFTCTDCGkgftkqsalTIHIRVHSGEKPFKCSECDKSFRL 962
9999995555..77777777555555555555555888888888444777777777777777777654 PP
>> tr|F7F066|F7F066_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 5.5 0.2 2.7e+02 64 64 .. 241 241 .. 165 297 .. 0.59
2 ? 3.1 0.6 0.13 1.7e+02 48 63 .. 337 352 .. 298 381 .. 0.57
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.2
E CS
Trm112p 64 p 64
p
tr|F7F066|F7F066_MONDO 241 P 241
2 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.13
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ e + C++cg a+
tr|F7F066|F7F066_MONDO 337 HTGEKPFKCSECGKAF 352
4444444444444444 PP
>> tr|F7GB24|F7GB24_MONDO Zinc finger protein OS=Monodelphis domestica OX=13616 GN=PRDM5 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.2 0.3 0.00019 0.25 41 67 .. 181 214 .. 141 214 .. 0.75
2 ? 0.2 0.0 1.1 1.4e+03 37 63 .. 305 331 .. 274 336 .. 0.71
3 ! 7.3 0.0 0.0062 8.2 2 64 .. 316 416 .. 315 417 .. 0.79
4 ? 0.5 0.4 0.82 1.1e+03 37 63 .. 464 500 .. 434 504 .. 0.66
5 ? 2.4 0.2 0.21 2.8e+02 41 64 .. 546 585 .. 507 588 .. 0.66
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00019
S.......CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y.......ellleldieegeLvCpncgraYpIkd 67
+ + l++ ee e+ C+ncg +p+k+
tr|F7GB24|F7GB24_MONDO 181 QeilaehlQMLHQKPSEEKEFKCKNCGKKFPVKQ 214
0333443477888999****************85 PP
== domain 2 score: 0.2 bits; conditional E-value: 1.1
----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 37 kpedyellleldieegeLvCpncgraY 63
k++ ++l e+ ++++ + C +c+ +
tr|F7GB24|F7GB24_MONDO 305 KCSSLSTLQEHRKVHEIFECQECNKKF 331
344446677777777777777777655 PP
== domain 3 score: 7.3 bits; conditional E-value: 0.0062
TGGCCC-B-TTTHH......C-....................-HHHHHHHHH.TT---.S-SS----S............CHHTTEE CS
Trm112p 2 llllniLaCpackg......pL....................dwealvevaa.lglne.lpkekpedy............ellleld 48
+++++i C c + +L ++ + +vaa + + + +++k++ + +++
tr|F7GB24|F7GB24_MONDO 316 RKVHEIFECQECNKkfitpnQLkrhmithsekrpyncevcnkSFKRIDQVAAhKIIHSeDKPYKCKLCgkgfahrnvyknH--KKTH 400
57788888888888666665557777777777777777777777777788888888887889999988*********9773..579* PP
CCCCEEEETTTTEEEE CS
Trm112p 49 ieegeLvCpncgraYp 64
ee ++C++c+ ++
tr|F7GB24|F7GB24_MONDO 401 SEERPFQCEECKALFR 416
************9885 PP
== domain 4 score: 0.5 bits; conditional E-value: 0.82
----S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 37 kpedy............ellleldieegeLvCpncgraY 63
k++ + +++ e e +Cp cg+ +
tr|F7GB24|F7GB24_MONDO 464 KCDLCdkafvtpsvlksH--KKTHTGEKEKICPYCGQKF 500
333334447777777542..56899999999****9988 PP
== domain 5 score: 2.4 bits; conditional E-value: 0.21
S................CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 41 y................ellleldieegeLvCpncgraYp 64
+ ++ ++++ e ++C c++ +
tr|F7GB24|F7GB24_MONDO 546 PyqctqcnkafsqkrglDEHMRTHTGEKPFQCDVCDLSFS 585
1222344677777778855699999999999999999986 PP
>> tr|H9H938|H9H938_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.5 0.1 0.0013 1.7 26 63 .. 64 112 .. 49 113 .. 0.87
2 ? 4.7 0.0 0.042 56 7 17 .. 121 133 .. 118 184 .. 0.70
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 0.0013
HHTT---.S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 26 aalglne.lpkekpedy..........ellleldieegeLvCpncgraY 63
++l+ ++ +p+++p++y ++ l ++ g L C nc +aY
tr|H9H938|H9H938_MONDO 64 EQLHREQdPPAPRPQFYtdlscpiclhHASLPIETNCGHLFCGNCLIAY 112
44566666*******************99999*************9999 PP
== domain 2 score: 4.7 bits; conditional E-value: 0.042
C-B-TTTHH..C- CS
Trm112p 7 iLaCpackg..pL 17
+++Cp+c++ +L
tr|H9H938|H9H938_MONDO 121 MVSCPICRQtvTL 133
899******6644 PP
>> tr|F7GHV3|F7GHV3_MONDO Deltex E3 ubiquitin ligase 4 OS=Monodelphis domestica OX=13616 GN=DTX4 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.2 0.00022 0.29 12 68 .] 358 423 .. 355 423 .. 0.75
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00022
TTHHC--HHHHHHHHH.TT---.S-SS----S...............CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 12 ackgpLdwealvevaa.lglne.lpkekpedy...............ellleldieegeLvCpncgraYpIkdG 68
+c +L aa g++ p kp+ + ++ ++ ++g+L+Cp c+ +Y +k G
tr|F7GHV3|F7GHV3_MONDO 358 ICMERL--------AApSGYKGpQPTVKPDLVgklskcghiyhlhclVAMYNNGNKDGSLQCPTCKTIYGVKTG 423
555555........5666677767777888888888888888887776667777888************99876 PP
>> tr|F6XH11|F6XH11_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.5 0.17 2.3e+02 41 66 .. 253 285 .. 190 287 .. 0.75
2 ? -1.9 0.0 4.7 6.3e+03 47 61 .. 294 308 .. 288 311 .. 0.83
3 ? 4.3 0.6 0.052 70 28 66 .. 379 426 .. 340 428 .. 0.72
4 ? 5.2 0.4 0.029 39 10 66 .. 472 538 .. 430 540 .. 0.74
5 ? 4.8 0.1 0.037 49 41 68 .] 567 596 .. 545 596 .. 0.77
6 ? 6.1 0.4 0.015 20 37 68 .] 667 708 .. 600 708 .. 0.72
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.17
S.........CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 41 y.........ellleldieegeLvCpncgraYpIk 66
+ l l+ e + Cp+c+ +++k
tr|F6XH11|F6XH11_MONDO 253 SfhqkghllkH--LPLHTGERPFHCPDCDKSFRVK 285
14555544333..5567777889999999999997 PP
== domain 2 score: -1.9 bits; conditional E-value: 4.7
EECCCCEEEETTTTE CS
Trm112p 47 ldieegeLvCpncgr 61
++ee + C++cg
tr|F6XH11|F6XH11_MONDO 294 RHREEKPFSCSECGK 308
58899999*****96 PP
== domain 3 score: 4.3 bits; conditional E-value: 0.052
TT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 28 lglnelpkekpedy...........ellleldieegeLvCpncgraYpIk 66
l+ e p + pe+ + l ++ e ++Cp+c+ +++k
tr|F6XH11|F6XH11_MONDO 379 LHTGERPFQCPECDksfhqkghllrH--LPIHTGERPFQCPECDKSFRVK 426
45555555555555667777744333..5566666779*********997 PP
== domain 4 score: 5.2 bits; conditional E-value: 0.029
-TTTHHC--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 10 CpackgpLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncgraYpIk 66
Cp c ++ +++a ++ + ++ e p +e+ ++ l+++ e + Cp c+ +++k
tr|F6XH11|F6XH11_MONDO 472 CPECDKTFRLKADMKAHQyTHSGEWPFSCSECGkgftrqfhlTEHLRMHTGEKPFRCPQCDKSFRVK 538
6666664444666666665555555555555557777777775557888888888888888888887 PP
== domain 5 score: 4.8 bits; conditional E-value: 0.037
S..CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 41 y..ellleldieegeLvCpncgraYpIkdG 68
y ++ ++++ e ++Cp+c+ ++ k G
tr|F6XH11|F6XH11_MONDO 567 YklTEHFRVHSGEKPFQCPECDTSFRLKSG 596
3554558899999************98866 PP
== domain 6 score: 6.1 bits; conditional E-value: 0.015
----S..........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 37 kpedy..........ellleldieegeLvCpncgraYpIkdG 68
+e+ ++ ++++ e ++Cp+c+ ++ k G
tr|F6XH11|F6XH11_MONDO 667 SCEECgkgfthqyklTEHFRVHSGEKPFQCPECDTSFRLKSG 708
233336677777788566999999*************98765 PP
>> tr|F6STE0|F6STE0_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.1 0.6 0.0035 4.7 53 67 .. 50 64 .. 6 64 .. 0.85
2 ? 3.8 0.7 0.078 1e+02 12 60 .. 69 110 .. 65 116 .. 0.69
3 ? 2.9 0.0 0.15 2e+02 2 21 .. 186 202 .. 185 269 .. 0.73
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.0035
EEEETTTTEEEEEET CS
Trm112p 53 eLvCpncgraYpIkd 67
+ Cp+c+ra+ Ikd
tr|F6STE0|F6STE0_MONDO 50 SCPCPECRRAFQIKD 64
556**********98 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.078
TTHHC--HHHHHHHHHTT---.S-SS----S..CHHTTEECCCCEEEETTTT CS
Trm112p 12 ackgpLdwealvevaalglne.lpkekpedy..ellleldieegeLvCpncg 60
+c g+L l++ +++++ + + + e ++ee++L C++++
tr|F6STE0|F6STE0_MONDO 69 HCLGKL----------SSLARnIRPYLLQLRmeRAICERHQEEQKLFCEEDQ 110
555555..........33444466666666677778899*********9986 PP
== domain 3 score: 2.9 bits; conditional E-value: 0.15
TGGCCC-B-TTTHHC--HHH CS
Trm112p 2 llllniLaCpackgpLdwea 21
++l+++L+C k L +
tr|F6STE0|F6STE0_MONDO 186 KRLYEFLKCE-EKWHL--QN 202
589******9.88766..22 PP
>> tr|H9H697|H9H697_MONDO Uncharacterized protein (Fragment) OS=Monodelphis domestica OX=13616 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.2 2.8 0.0069 9.2 41 67 .. 20 58 .. 2 58 .. 0.67
2 ? 2.3 0.1 0.23 3.1e+02 48 63 .. 66 81 .. 61 82 .. 0.81
3 ? -0.4 0.0 1.6 2.1e+03 47 67 .. 93 113 .. 83 114 .. 0.81
Alignments for each domain:
== domain 1 score: 7.2 bits; conditional E-value: 0.0069
S..............CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y..............ellleldieegeLvCpncgraYpIkd 67
+ ++ e ++C++cg ++++k+
tr|H9H697|H9H697_MONDO 20 NecgkaftqrnhlicH--QGIHTGEKPFQCKECGKIFRVKN 58
4555555555543331..2367778899***********97 PP
== domain 2 score: 2.3 bits; conditional E-value: 0.23
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ e + C++cg a+
tr|H9H697|H9H697_MONDO 66 HTGEKPFECNECGKAF 81
55677789*****999 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.6
EECCCCEEEETTTTEEEEEET CS
Trm112p 47 ldieegeLvCpncgraYpIkd 67
++ e + C++ g ++ +++
tr|H9H697|H9H697_MONDO 93 THTGEKLFECNKYGKTFSVRQ 113
566778889999999999985 PP
>> tr|F6TA30|F6TA30_MONDO Snail family transcriptional repressor 2 OS=Monodelphis domestica OX=13616 GN=SNAI2 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.36 4.8e+02 47 63 .. 121 137 .. 64 142 .. 0.74
2 ? 6.5 0.5 0.011 15 43 63 .. 202 222 .. 144 223 .. 0.79
3 ? -0.4 0.0 1.6 2.1e+03 45 63 .. 232 250 .. 224 251 .. 0.79
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.36
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
+ ie ++++C+ c+ +Y
tr|F6TA30|F6TA30_MONDO 121 HAIEAEKFQCSLCNKTY 137
4788899******9999 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.011
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
++++ e + Cp+c+ra+
tr|F6TA30|F6TA30_MONDO 202 GHIRTHTGEKPFSCPHCNRAF 222
44889999999*********9 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.6
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
l+++ + + +C+nc ++
tr|F6TA30|F6TA30_MONDO 232 LQTHSDVKKYQCKNCSKTF 250
77888888889****8877 PP
>> tr|F6V0G1|F6V0G1_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=LOC100014233 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 1.0 0.38 5e+02 47 63 .. 288 304 .. 216 361 .. 0.69
2 ? 2.7 1.5 0.17 2.3e+02 23 63 .. 373 416 .. 351 417 .. 0.61
3 ? 1.2 0.1 0.52 6.8e+02 44 64 .. 453 473 .. 425 475 .. 0.79
4 ? -0.3 5.4 1.5 2e+03 55 63 .. 578 586 .. 491 673 .. 0.59
5 ? 10.4 0.3 0.00067 0.89 9 63 .. 690 782 .. 689 787 .. 0.81
6 ? 2.4 0.5 0.22 2.9e+02 9 63 .. 802 838 .. 788 839 .. 0.70
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.38
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
l+ +g++ C+ cg ++
tr|F6V0G1|F6V0G1_MONDO 288 LHSGNGQFSCSTCGKVF 304
44455555555555554 PP
== domain 2 score: 2.7 bits; conditional E-value: 0.17
HHHHH.TT---S-SS----S..CHHTTEECCCCEEEETTTTEEE CS
Trm112p 23 vevaa.lglnelpkekpedy..ellleldieegeLvCpncgraY 63
+++ + ++ k+ + +y ++ ++++ e ++Cp+c+ +
tr|F6V0G1|F6V0G1_MONDO 373 HSTERpFACTQCEKDFTHQYklTEHMRVHSGEKPFQCPECDKSF 416
4444444444444444444488667999************9877 PP
== domain 3 score: 1.2 bits; conditional E-value: 0.52
HTTEECCCCEEEETTTTEEEE CS
Trm112p 44 lleldieegeLvCpncgraYp 64
++++ e ++C++cg ++
tr|F6V0G1|F6V0G1_MONDO 453 HMRVHSGEKPFQCTECGKSFR 473
3788999999*******9985 PP
== domain 4 score: -0.3 bits; conditional E-value: 1.5
EETTTTEEE CS
Trm112p 55 vCpncgraY 63
+Cp c+ +
tr|F6V0G1|F6V0G1_MONDO 578 QCPQCNKSF 586
444444333 PP
== domain 5 score: 10.4 bits; conditional E-value: 0.00067
B-TTTHHC--HHHHHHHHH.TT---S-SS----S.....................................CHHTTEECCCCEEEET CS
Trm112p 9 aCpackgpLdwealvevaa.lglnelpkekpedy.....................................ellleldieegeLvCp 57
+Cp c + +w+a ++ + l+ e p + p++ ++ ++++ e ++Cp
tr|F6V0G1|F6V0G1_MONDO 690 QCPECNKSFRWKAGMKAHQrLHRGERPFQCPDCDksfslkaylkahqrihkrekpfscsecgknfadqfrlTEHIRVHTGEKPFQCP 776
6************************99999999999*******88877777777777777777777777775557777777777777 PP
TTTEEE CS
Trm112p 58 ncgraY 63
+c+ +
tr|F6V0G1|F6V0G1_MONDO 777 ECDKSF 782
777666 PP
== domain 6 score: 2.4 bits; conditional E-value: 0.22
B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 9 aCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraY 63
+Cp c + +w+a ++ + l++ e ++ C++c+ ++
tr|F6V0G1|F6V0G1_MONDO 802 QCPECNKSFRWKAGMKAHQ--------------R----LHKGERVFSCSECDKCF 838
4666666666666666666..............4....77777888888877666 PP
>> tr|F7C2Z3|F7C2Z3_MONDO Tripartite motif containing 9 OS=Monodelphis domestica OX=13616 GN=TRIM9 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.3 0.2 0.027 36 48 64 .. 2 18 .. 1 18 [. 0.88
2 ? 2.5 3.6 0.19 2.5e+02 8 58 .. 126 243 .. 124 247 .. 0.59
Alignments for each domain:
== domain 1 score: 5.3 bits; conditional E-value: 0.027
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+++e+eL Cp cg Y+
tr|F7C2Z3|F7C2Z3_MONDO 2 EEMEEELKCPVCGSFYR 18
689**********9885 PP
== domain 2 score: 2.5 bits; conditional E-value: 0.19
-B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S...................................... CS
Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy...................................... 41
++Cp+c+ L +e ++++ + + + l+ +++e++
tr|F7C2Z3|F7C2Z3_MONDO 126 ITCPQCHRSLilddrglrgfpknrVLEGVIDRYQqSKAAALKCQLCEKApkeatvmceqcdvfycepcrlrchpprgplakhrlvpp 212
579999997777777778888777777777777777777788888888886655444444444444444444444444444444444 PP
..............CHHTTEECCCCEEEETT CS
Trm112p 42 ..............ellleldieegeLvCpn 58
+++ ++ e+ +++C
tr|F7C2Z3|F7C2Z3_MONDO 213 aqgrvsrrlsprkiSTCTDHELENHSMYCVQ 243
4444455555555555555555555555555 PP
>> tr|F6TD90|F6TD90_MONDO SH3 domain containing ring finger 1 OS=Monodelphis domestica OX=13616 GN=SH3RF1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 5.5 0.011 14 3 60 .. 5 53 .. 3 55 .. 0.76
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.011
GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+
tr|F6TD90|F6TD90_MONDO 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVGSRNELRCPECR 53
69*************..........12223344444...25559999**************8 PP
>> tr|H9H6F6|H9H6F6_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=LOC100619447 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.5 0.3 0.4 5.3e+02 41 63 .. 293 325 .. 262 326 .. 0.70
Alignments for each domain:
== domain 1 score: 1.5 bits; conditional E-value: 0.4
S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y............ellleldieegeLvCpncgraY 63
+ ++++ e + C++cg a+
tr|H9H6F6|H9H6F6_MONDO 293 CgkafqqkgdlkrH--YRIHTGEKPFKCSECGKAF 325
34444444455333..5678888889999999988 PP
>> tr|F6U2N3|F6U2N3_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.1 0.43 5.7e+02 43 63 .. 277 297 .. 249 298 .. 0.72
2 ? -2.4 0.0 6.6 8.8e+03 51 64 .. 313 326 .. 306 328 .. 0.79
3 ? 6.7 1.1 0.0095 13 9 63 .. 345 407 .. 317 408 .. 0.82
4 ? 2.7 0.5 0.17 2.2e+02 63 63 .. 435 435 .. 413 464 .. 0.53
5 ? -2.4 0.0 6.5 8.7e+03 50 63 .. 478 491 .. 473 495 .. 0.80
6 ? 4.5 0.2 0.049 65 41 63 .. 523 547 .. 492 551 .. 0.72
7 ? 0.2 0.8 1 1.4e+03 46 63 .. 614 631 .. 553 634 .. 0.56
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.43
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
+l ++++ e ++ C+ cg ++
tr|F6U2N3|F6U2N3_MONDO 277 VLKRIHKGEASFECNTCGKCF 297
46679999**********998 PP
== domain 2 score: -2.4 bits; conditional E-value: 6.6
CCEEEETTTTEEEE CS
Trm112p 51 egeLvCpncgraYp 64
e + C +cg +++
tr|F6U2N3|F6U2N3_MONDO 313 EKPFACDECGKTFR 326
66678*****9985 PP
== domain 3 score: 6.7 bits; conditional E-value: 0.0095
B-TTTHH......C-.-HHHHHHHHH.TT---S-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 9 aCpackg......pL.dwealvevaa.lglnelpkekpedyellleldieegeLvCpncgraY 63
aC+ c + +L +++a+ ++ ++ n k+ + ++ ++ iee ++ C++cg +
tr|F6U2N3|F6U2N3_MONDO 345 ACNECGKtfiekgKLtEYQAIHAGEKlFKCNGCGKAFSASLTEQWKFYIEEKQFKCNECGKFF 407
5666666444444668889999999888888888888888877889*************9876 PP
== domain 4 score: 2.7 bits; conditional E-value: 0.17
E CS
Trm112p 63 Y 63
+
tr|F6U2N3|F6U2N3_MONDO 435 F 435
4 PP
== domain 5 score: -2.4 bits; conditional E-value: 6.5
CCCEEEETTTTEEE CS
Trm112p 50 eegeLvCpncgraY 63
e ++C +cg a+
tr|F6U2N3|F6U2N3_MONDO 478 GEKPFTCLECGKAF 491
567789*****998 PP
== domain 6 score: 4.5 bits; conditional E-value: 0.049
S....CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y....ellleldieegeLvCpncgraY 63
+ ++++ e +vC++cg a+
tr|F6U2N3|F6U2N3_MONDO 523 SslrkH--HRTHTGEKPFVCNECGKAF 547
355442..579999999*******999 PP
== domain 7 score: 0.2 bits; conditional E-value: 1
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++ e + C++cg ++
tr|F6U2N3|F6U2N3_MONDO 614 RIHTGEKPFECNECGKTF 631
234444555566666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 1214 (0.0570703); expected 425.4 (0.02)
Passed bias filter: 887 (0.041698); expected 425.4 (0.02)
Passed Vit filter: 93 (0.00437194); expected 21.3 (0.001)
Passed Fwd filter: 43 (0.00202144); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.41u 0.01s 00:00:00.42 Elapsed: 00:00:00.14
# Mc/sec: 5472.18
//
[ok]