# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.3e-14   53.5   0.0    1.6e-14   53.3   0.0    1.1  1  tr|A9V1Q7|A9V1Q7_MONBE  Predicted protein OS=Monosiga brevico


Domain annotation for each sequence (and alignments):
>> tr|A9V1Q7|A9V1Q7_MONBE  Predicted protein OS=Monosiga brevicollis OX=81824 GN=32793 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.7e-18   1.6e-14       1      68 []       2     112 ..       2     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.7e-18
                             BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CH CS
                 Trm112p   1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........el 43 
                             kll++n+L+++ +kg     pL                           w++l ++a   g+ + lp + p d+           ++
  tr|A9V1Q7|A9V1Q7_MONBE   2 KLLTHNMLKSH-VKGvkdgyPLrlsaskvelkevtfnadfvvrmldriVWPVLRQTAIeIGQGDnLPTDIPADAatneeflramhHV 87 
                             789********.********9999*************************************************************** PP

                             HTTEECCCCEEEETTTTEEEEEETT CS
                 Trm112p  44 lleldieegeLvCpncgraYpIkdG 68 
                             lle+ ++egeL Cp++gr +pIk+G
  tr|A9V1Q7|A9V1Q7_MONBE  88 LLEVLVLEGELECPETGRKFPIKKG 112
                             ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                         9188  (5511963 residues searched)
Passed MSV filter:                       280  (0.0304745); expected 183.8 (0.02)
Passed bias filter:                      241  (0.0262299); expected 183.8 (0.02)
Passed Vit filter:                        20  (0.00217675); expected 9.2 (0.001)
Passed Fwd filter:                         1  (0.000108838); expected 0.1 (1e-05)
Initial search space (Z):               9188  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04
# Mc/sec: 9370.34
//
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