# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Trm112p.hmm.txt # target sequence database: proteomes/Mus_musculus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Trm112p [M=68] Accession: PF03966.15 Description: Trm112p-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-17 63.6 0.0 2.8e-17 63.3 0.0 1.1 1 sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase sub 6.9e-08 33.3 0.1 2.7e-07 31.4 0.1 2.0 1 sp|Q9D1C3|PREY_MOUSE Protein preY, mitochondrial OS=Mus mu ------ inclusion threshold ------ 0.015 16.2 0.1 2.7 9.0 0.0 3.6 4 sp|Q4VA45|CK095_MOUSE Uncharacterized protein C11orf95 homo 0.046 14.6 10.2 12 6.9 0.1 6.7 3 sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus muscul 0.14 13.0 0.8 40 5.2 0.0 3.2 3 sp|Q6V5K9|ZN474_MOUSE Zinc finger protein 474 OS=Mus muscul 0.37 11.7 2.4 15 6.5 0.5 3.6 3 sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musc 0.37 11.7 13.4 0.66 10.9 0.3 5.3 4 tr|E9Q2S7|E9Q2S7_MOUSE Zinc finger protein 266 OS=Mus muscul 0.8 10.6 3.1 72 4.4 0.1 3.7 3 sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 6 1.9 9.4 10.8 43 5.1 0.1 4.2 3 tr|Q78F42|Q78F42_MOUSE Zinc finger protein 324 OS=Mus muscul 3.2 8.7 12.0 4.9 8.1 0.2 4.0 4 tr|Q8BIN3|Q8BIN3_MOUSE Expressed sequence AI854703 OS=Mus mu 5.8 7.9 5.5 16 6.5 5.5 1.8 1 sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS 6.2 7.8 5.1 18 6.3 5.1 1.8 1 sp|Q8BZT2|SH3R2_MOUSE E3 ubiquitin-protein ligase SH3RF2 OS 6.3 7.8 8.9 39 5.2 0.2 3.6 2 sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS= 7.6 7.5 18.2 46 5.0 0.1 6.6 5 tr|Q8BIV1|Q8BIV1_MOUSE Zinc finger protein 719 OS=Mus muscul Domain annotation for each sequence (and alignments): >> sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus OX=10090 GN=Trmt # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.3 0.0 1.8e-20 2.8e-17 1 68 [] 2 112 .. 2 112 .. 0.98 Alignments for each domain: == domain 1 score: 63.3 bits; conditional E-value: 1.8e-20 BTGGCCC-B-TTTHH......C-..........................-HHHHHHHHH.TT---S-SS----S...........CHH CS Trm112p 1 kllllniLaCpackg......pL..........................dwealvevaa.lglnelpkekpedy...........ell 44 kll++n+L+++ ++g pL +w+alv++a l+l+e+pke++e y ++l sp|Q9DCG9|TR112_MOUSE 2 KLLTHNLLSSH-VRGvgtrgfPLrlqatevrinpvefnpefvarmipkvEWAALVQAADtLNLAEVPKEPTEGYehdetflrkmhHVL 88 789********.*********9999*************************************************************** PP TTEECCCCEEEETTTTEEEEEETT CS Trm112p 45 leldieegeLvCpncgraYpIkdG 68 le+d++eg+L+Cp+ gr +pI+ G sp|Q9DCG9|TR112_MOUSE 89 LEVDVLEGTLQCPESGRLFPISRG 112 *********************988 PP >> sp|Q9D1C3|PREY_MOUSE Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.4 0.1 1.7e-10 2.7e-07 2 68 .] 50 88 .. 49 88 .. 0.95 Alignments for each domain: == domain 1 score: 31.4 bits; conditional E-value: 1.7e-10 TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68 + ll +L+Cp+ k+pL ++ ++eLv+++ g+aYpI dG sp|Q9D1C3|PREY_MOUSE 50 PALLQFLVCPLSKKPL------------------------R----YEASTNELVNEELGIAYPIIDG 88 689*************........................5....9********************9 PP >> sp|Q4VA45|CK095_MOUSE Uncharacterized protein C11orf95 homolog OS=Mus musculus OX=10090 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 5 8e+03 41 60 .. 109 130 .. 86 139 .. 0.74 2 ? 9.0 0.0 0.0017 2.7 39 64 .. 257 293 .. 220 293 .. 0.76 3 ? 0.5 0.0 0.73 1.2e+03 41 60 .. 416 441 .. 387 462 .. 0.73 4 ? 0.9 0.0 0.55 8.8e+02 41 60 .. 575 606 .. 548 619 .. 0.75 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 5 S..CHHTTEECCCCEEEETTTT CS Trm112p 41 y..ellleldieegeLvCpncg 60 + e l+ + + +vC cg sp|Q4VA45|CK095_MOUSE 109 WrlEYLMDFIPSRHGMVCMVCG 130 2666677788888889998887 PP == domain 2 score: 9.0 bits; conditional E-value: 0.0017 --S...........CHHTTEECCCCEEEETTTTEEEE CS Trm112p 39 edy...........ellleldieegeLvCpncgraYp 64 e++ e l+ +d + LvC +cgra p sp|Q4VA45|CK095_MOUSE 257 ERRlkeslqnwfraECLMDYDPRGNRLVCMACGRALP 293 33344444666888999*****************976 PP == domain 3 score: 0.5 bits; conditional E-value: 0.73 S......CHHTTEECCCCEEEETTTT CS Trm112p 41 y......ellleldieegeLvCpncg 60 y e l+eld + LvC cg sp|Q4VA45|CK095_MOUSE 416 YqerwrlEYLMELDGCRRGLVCMVCG 441 04445666677777777777777776 PP == domain 4 score: 0.9 bits; conditional E-value: 0.55 S............CHHTTEECCCCEEEETTTT CS Trm112p 41 y............ellleldieegeLvCpncg 60 + e l+ +d + LvC cg sp|Q4VA45|CK095_MOUSE 575 ReqrrnyqprwrgEYLMDYDGSRRGLVCMVCG 606 15566677777777788888888888888887 PP >> sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus musculus OX=10090 GN=Znf629 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 2.1 0.82 1.3e+03 10 63 .. 375 382 .. 290 439 .. 0.69 2 ? 6.9 0.1 0.0073 12 41 63 .. 491 522 .. 446 523 .. 0.74 3 ? 3.5 0.0 0.083 1.3e+02 10 60 .. 715 846 .. 713 850 .. 0.53 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.82 -TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEE CS Trm112p 10 CpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraY 63 Cp+c + ++ sp|Q6A085|ZN629_MOUSE 375 CPVCGK----------------------------------------------TF 382 444444..............................................33 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0073 S...........CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y...........ellleldieegeLvCpncgraY 63 + ++++++e+ +vC++cg a+ sp|Q6A085|ZN629_MOUSE 491 GksfsqssnlitH--VRTHMDENLFVCSDCGKAF 522 2555566666444..88**************999 PP == domain 3 score: 3.5 bits; conditional E-value: 0.083 -TTTHH......C-.........................................................................- CS Trm112p 10 Cpackg......pL.........................................................................d 18 Cp ck+ +L + sp|Q6A085|ZN629_MOUSE 715 CPECKKsfglssELlqhqkvhaggksqksselgksssvllehlrsplgarpyscsdcgasfldrlaltrhqeththerastpedtpsE 802 6666665533333355555555555555555555555555555555566666666666665554444444444444444444444444 PP HHHHHHHHH.TT---.S-SS----S.CHHTTEECCCCEEEETTTT CS Trm112p 19 wealvevaa.lglne.lpkekpedy.ellleldieegeLvCpncg 60 + l+++++ +g ++ +pk + e+ +++ e+ + Cp+cg sp|Q6A085|ZN629_MOUSE 803 SATLSTNQEdEGEAStPPKSSSH-GeEESPKTVSEKKPFLCPECG 846 44445555555555533333333.267778899999999999998 PP >> sp|Q6V5K9|ZN474_MOUSE Zinc finger protein 474 OS=Mus musculus OX=10090 GN=Znf474 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 0.0 0.036 58 48 63 .. 157 172 .. 114 173 .. 0.61 2 ? -1.3 0.1 2.6 4.2e+03 53 63 .. 218 228 .. 215 229 .. 0.89 3 ? 5.2 0.0 0.025 40 56 66 .. 284 294 .. 244 295 .. 0.83 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.036 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + + + L C+ncgr++ sp|Q6V5K9|ZN474_MOUSE 157 SAQAQLLPCENCGRTF 172 34459999******99 PP == domain 2 score: -1.3 bits; conditional E-value: 2.6 EEEETTTTEEE CS Trm112p 53 eLvCpncgraY 63 +L+C cgr + sp|Q6V5K9|ZN474_MOUSE 218 TLICYICGREF 228 79******987 PP == domain 3 score: 5.2 bits; conditional E-value: 0.025 ETTTTEEEEEE CS Trm112p 56 CpncgraYpIk 66 Cpncgr++ ++ sp|Q6V5K9|ZN474_MOUSE 284 CPNCGRTFAVD 294 ********986 PP >> sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musculus OX=10090 GN=Snai2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.24 3.9e+02 42 63 .. 122 138 .. 66 143 .. 0.76 2 ? 6.5 0.5 0.0096 15 43 63 .. 203 223 .. 145 224 .. 0.79 3 ? -0.4 0.0 1.4 2.2e+03 45 63 .. 233 251 .. 225 252 .. 0.79 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.24 CHHTTEECCCCEEEETTTTEEE CS Trm112p 42 ellleldieegeLvCpncgraY 63 + ie ++++C+ c+ +Y sp|P97469|SNAI2_MOUSE 122 H-----AIEAEKFQCNLCNKTY 138 4.....78999*******9999 PP == domain 2 score: 6.5 bits; conditional E-value: 0.0096 HHTTEECCCCEEEETTTTEEE CS Trm112p 43 llleldieegeLvCpncgraY 63 ++++ e + Cp+c+ra+ sp|P97469|SNAI2_MOUSE 203 GHIRTHTGEKPFSCPHCNRAF 223 44889999999*********9 PP == domain 3 score: -0.4 bits; conditional E-value: 1.4 TTEECCCCEEEETTTTEEE CS Trm112p 45 leldieegeLvCpncgraY 63 l+++ + + +C+nc ++ sp|P97469|SNAI2_MOUSE 233 LQTHSDVKKYQCKNCSKTF 251 77888888889****8877 PP >> tr|E9Q2S7|E9Q2S7_MOUSE Zinc finger protein 266 OS=Mus musculus OX=10090 GN=Zfp266 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 8.2 1.3e+04 50 63 .. 227 240 .. 220 241 .. 0.80 2 ? 10.9 0.3 0.00041 0.66 19 63 .. 321 380 .. 300 381 .. 0.82 3 ? 2.5 0.7 0.18 2.8e+02 30 63 .. 449 492 .. 388 493 .. 0.76 4 ? 2.7 0.2 0.15 2.3e+02 46 63 .. 531 548 .. 500 579 .. 0.65 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 8.2 CCCEEEETTTTEEE CS Trm112p 50 eegeLvCpncgraY 63 e + C++c a+ tr|E9Q2S7|E9Q2S7_MOUSE 227 NEKPFECTDCETAF 240 567789****9998 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00041 HHHHHHHHH.TT---S-SS----S..............CHHTTEECCCCEEEETTTTEEE CS Trm112p 19 wealvevaa.lglnelpkekpedy..............ellleldieegeLvCpncgraY 63 w+a+ ++ +++ ++ e +++ ++ ++++ ee +vC++cg a+ tr|E9Q2S7|E9Q2S7_MOUSE 321 WKAFTVSSHlTQYVSIHTEEKSKVckicgksfanysrlSAHVKTHNEEKPFVCKECGKAF 380 777777777777777666666666788899999999997779***************999 PP == domain 3 score: 2.5 bits; conditional E-value: 0.18 ---S-SS----S............CHHTTEECCCCEEEETTTTEEE CS Trm112p 30 lnelpkekpedy............ellleldieegeLvCpncgraY 63 + ++++ +++ + ++++ e + C++cg a+ tr|E9Q2S7|E9Q2S7_MOUSE 449 HTGIKPYECKECgkaftqysglatH--VRIHSGEKPFACKECGKAF 492 3336666666667777777777443..7888999999999999988 PP == domain 4 score: 2.7 bits; conditional E-value: 0.15 TEECCCCEEEETTTTEEE CS Trm112p 46 eldieegeLvCpncgraY 63 +++ e +vC+ cg a+ tr|E9Q2S7|E9Q2S7_MOUSE 531 KIHSGEKPFVCNICGKAF 548 455555555565555555 PP >> sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus OX=10090 GN=Trim67 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.1 0.13 2e+02 50 63 .. 1 14 [. 1 15 [. 0.88 2 ? 0.7 0.0 0.63 1e+03 42 61 .. 140 159 .. 96 161 .. 0.76 3 ? 4.4 0.1 0.045 72 8 60 .. 231 306 .. 229 307 .. 0.80 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.13 CCCEEEETTTTEEE CS Trm112p 50 eegeLvCpncgraY 63 +e+eL Cp cg + sp|Q505D9|TRI67_MOUSE 1 MEEELKCPVCGSLF 14 699********988 PP == domain 2 score: 0.7 bits; conditional E-value: 0.63 CHHTTEECCCCEEEETTTTE CS Trm112p 42 ellleldieegeLvCpncgr 61 ++ l+ + +++Cp c+r sp|Q505D9|TRI67_MOUSE 140 AACSSLCSSSSSITCPQCHR 159 56777888899999***988 PP == domain 3 score: 4.4 bits; conditional E-value: 0.045 -B-TTTHHC--HHHHHHHHH.TT---S-SS----S.............................CHHTTEECCCCEEEETTTT CS Trm112p 8 LaCpackgpLdwealvevaa.lglnelpkekpedy.............................ellleldieegeLvCpncg 60 L+C+ +gp +++ l ++ +p+++pe ++ e+++e+ +++C +c+ sp|Q505D9|TRI67_MOUSE 231 LKCHPSRGPF-------AKHrLVQPPPPPTPPEATpavtgtstassaggcrspggagasaprkfPTCPEHEMENYSMYCVSCR 306 7788888888.......55555566677777777799999999999999999999999999999567789*********9997 PP >> tr|Q78F42|Q78F42_MOUSE Zinc finger protein 324 OS=Mus musculus OX=10090 GN=Zfp324 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.1 0.027 43 46 63 .. 367 384 .. 326 385 .. 0.81 2 ? 5.0 0.2 0.029 46 47 63 .. 452 468 .. 404 469 .. 0.72 3 ? 4.4 0.1 0.046 73 47 64 .. 508 525 .. 476 525 .. 0.85 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.027 TEECCCCEEEETTTTEEE CS Trm112p 46 eldieegeLvCpncgraY 63 +++ +e ++ C++cg a+ tr|Q78F42|Q78F42_MOUSE 367 RIHTVEKSFHCNECGKAF 384 478899*********999 PP == domain 2 score: 5.0 bits; conditional E-value: 0.029 EECCCCEEEETTTTEEE CS Trm112p 47 ldieegeLvCpncgraY 63 ++ e + Cp+cgra+ tr|Q78F42|Q78F42_MOUSE 452 VHTGEKPFSCPHCGRAF 468 45556889********9 PP == domain 3 score: 4.4 bits; conditional E-value: 0.046 EECCCCEEEETTTTEEEE CS Trm112p 47 ldieegeLvCpncgraYp 64 ++ e +vC+ cgra++ tr|Q78F42|Q78F42_MOUSE 508 IHTGEKPFVCTQCGRAFR 525 56667889********96 PP >> tr|Q8BIN3|Q8BIN3_MOUSE Expressed sequence AI854703 OS=Mus musculus OX=10090 GN=AI854703 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.2 0.003 4.9 52 66 .. 66 80 .. 28 82 .. 0.78 2 ? 6.2 0.1 0.012 20 48 66 .. 90 108 .. 83 110 .. 0.78 3 ? -0.1 0.3 1.1 1.8e+03 55 64 .. 125 134 .. 116 134 .. 0.89 4 ? -1.4 0.2 2.8 4.4e+03 56 63 .. 168 175 .. 167 176 .. 0.85 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.003 CEEEETTTTEEEEEE CS Trm112p 52 geLvCpncgraYpIk 66 ++vCp+cg a+ +k tr|Q8BIN3|Q8BIN3_MOUSE 66 AAFVCPECGKAFSVK 80 579*********997 PP == domain 2 score: 6.2 bits; conditional E-value: 0.012 ECCCCEEEETTTTEEEEEE CS Trm112p 48 dieegeLvCpncgraYpIk 66 + e + Cp+cgr++ k tr|Q8BIN3|Q8BIN3_MOUSE 90 HTGERPFACPECGRCFSLK 108 55667788********876 PP == domain 3 score: -0.1 bits; conditional E-value: 1.1 EETTTTEEEE CS Trm112p 55 vCpncgraYp 64 +C cgr+++ tr|Q8BIN3|Q8BIN3_MOUSE 125 QCAQCGRCFR 134 69*****996 PP == domain 4 score: -1.4 bits; conditional E-value: 2.8 ETTTTEEE CS Trm112p 56 CpncgraY 63 Cp+cg + tr|Q8BIN3|Q8BIN3_MOUSE 168 CPRCGKSF 175 9***9887 PP >> sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus OX=10090 GN=Sh3rf1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 5.5 0.0098 16 3 60 .. 5 53 .. 3 55 .. 0.76 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0098 GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60 ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+ sp|Q69ZI1|SH3R1_MOUSE 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVGSRNELRCPECR 53 69*************..........12223344444...25559999**************8 PP >> sp|Q8BZT2|SH3R2_MOUSE E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus OX=10090 GN=Sh3rf2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 5.1 0.011 18 1 60 [. 3 53 .. 3 57 .. 0.68 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.011 BTGGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS Trm112p 1 kllllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60 +l+ll++L Cp+c +L +v+a + lp +++ l ++ + + eL Cp+c+ sp|Q8BZT2|SH3R2_MOUSE 3 DLTLLDLLECPVCFEKL------DVTA----KvLP---CQHTfckPCLQRIFKAHKELRCPECR 53 689**************......2221....1122...33335544444567788********8 PP >> sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus OX=10090 GN=Trim9 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.2 0.025 39 48 64 .. 2 18 .. 1 18 [. 0.88 2 ? 1.8 4.1 0.3 4.7e+02 8 60 .. 126 245 .. 124 247 .. 0.64 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.025 ECCCCEEEETTTTEEEE CS Trm112p 48 dieegeLvCpncgraYp 64 +++e+eL Cp cg Y+ sp|Q8C7M3|TRIM9_MOUSE 2 EEMEEELKCPVCGSFYR 18 689**********9885 PP == domain 2 score: 1.8 bits; conditional E-value: 0.3 -B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S....................................... CS Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy....................................... 41 ++Cp+c+ L +e ++++ + + + l+ +++e++ sp|Q8C7M3|TRIM9_MOUSE 126 ITCPQCHRSLilddrglrgfpknrVLEGVIDRYQqSKAAALKCQLCEKApkeatvmceqcdvfycdpcrlrchpprgplakhrlvppa 213 5788888877777777777777776777777777777777777777777766665555555555555555555555555555555555 PP .............CHHTTEECCCCEEEETTTT CS Trm112p 42 .............ellleldieegeLvCpncg 60 +++ ++ e+ +++C c+ sp|Q8C7M3|TRIM9_MOUSE 214 qgrvsrrlsprkvSTCTDHELENHSMYCVQCK 245 55556666666666666677777777776665 PP >> tr|Q8BIV1|Q8BIV1_MOUSE Zinc finger protein 719 OS=Mus musculus OX=10090 GN=Zfp719 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 0.18 2.8e+02 47 63 .. 278 294 .. 230 295 .. 0.80 2 ? 1.1 1.7 0.48 7.7e+02 47 66 .. 418 437 .. 314 439 .. 0.67 3 ? 5.0 0.1 0.029 46 43 63 .. 470 490 .. 440 491 .. 0.79 4 ? 4.5 0.6 0.041 66 33 63 .. 590 630 .. 511 631 .. 0.77 5 ? -1.7 0.1 3.4 5.5e+03 51 63 .. 674 686 .. 650 687 .. 0.71 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.18 EECCCCEEEETTTTEEE CS Trm112p 47 ldieegeLvCpncgraY 63 ++ +e +++C+ cg ++ tr|Q8BIV1|Q8BIV1_MOUSE 278 TNSMETSFICHTCGKTF 294 67899*********988 PP == domain 2 score: 1.1 bits; conditional E-value: 0.48 EECCCCEEEETTTTEEEEEE CS Trm112p 47 ldieegeLvCpncgraYpIk 66 ++ e Cp+cg + Ik tr|Q8BIV1|Q8BIV1_MOUSE 418 FHTGEKPYECPDCGKSFSIK 437 44455555688888888886 PP == domain 3 score: 5.0 bits; conditional E-value: 0.029 HHTTEECCCCEEEETTTTEEE CS Trm112p 43 llleldieegeLvCpncgraY 63 + ++++ ++ ++vC++cg a+ tr|Q8BIV1|Q8BIV1_MOUSE 470 VHHQIHTDRRSFVCSDCGMAF 490 4479999***********999 PP == domain 4 score: 4.5 bits; conditional E-value: 0.041 S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS Trm112p 33 lpkekpedy..........ellleldieegeLvCpncgraY 63 +++k++d ++ ++++ e +vC++cg a+ tr|Q8BIV1|Q8BIV1_MOUSE 590 EKPYKCSDCgksfrrashlKVHHRIHTGEKPFVCSECGKAF 630 3444444448888888877444788899999******9998 PP == domain 5 score: -1.7 bits; conditional E-value: 3.4 CCEEEETTTTEEE CS Trm112p 51 egeLvCpncgraY 63 e vC +cg a+ tr|Q8BIV1|Q8BIV1_MOUSE 674 EKPYVCAECGKAF 686 5555899999988 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (68 nodes) Target sequences: 22289 (11757923 residues searched) Passed MSV filter: 1221 (0.0547804); expected 445.8 (0.02) Passed bias filter: 893 (0.0400646); expected 445.8 (0.02) Passed Vit filter: 112 (0.0050249); expected 22.3 (0.001) Passed Fwd filter: 43 (0.0019292); expected 0.2 (1e-05) Initial search space (Z): 22289 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.33u 0.01s 00:00:00.34 Elapsed: 00:00:00.10 # Mc/sec: 7995.39 // [ok]