# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-17 63.6 0.0 2.8e-17 63.3 0.0 1.1 1 sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase sub
6.9e-08 33.3 0.1 2.7e-07 31.4 0.1 2.0 1 sp|Q9D1C3|PREY_MOUSE Protein preY, mitochondrial OS=Mus mu
------ inclusion threshold ------
0.015 16.2 0.1 2.7 9.0 0.0 3.6 4 sp|Q4VA45|CK095_MOUSE Uncharacterized protein C11orf95 homo
0.046 14.6 10.2 12 6.9 0.1 6.7 3 sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus muscul
0.14 13.0 0.8 40 5.2 0.0 3.2 3 sp|Q6V5K9|ZN474_MOUSE Zinc finger protein 474 OS=Mus muscul
0.37 11.7 2.4 15 6.5 0.5 3.6 3 sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musc
0.37 11.7 13.4 0.66 10.9 0.3 5.3 4 tr|E9Q2S7|E9Q2S7_MOUSE Zinc finger protein 266 OS=Mus muscul
0.8 10.6 3.1 72 4.4 0.1 3.7 3 sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 6
1.9 9.4 10.8 43 5.1 0.1 4.2 3 tr|Q78F42|Q78F42_MOUSE Zinc finger protein 324 OS=Mus muscul
3.2 8.7 12.0 4.9 8.1 0.2 4.0 4 tr|Q8BIN3|Q8BIN3_MOUSE Expressed sequence AI854703 OS=Mus mu
5.8 7.9 5.5 16 6.5 5.5 1.8 1 sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS
6.2 7.8 5.1 18 6.3 5.1 1.8 1 sp|Q8BZT2|SH3R2_MOUSE E3 ubiquitin-protein ligase SH3RF2 OS
6.3 7.8 8.9 39 5.2 0.2 3.6 2 sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=
7.6 7.5 18.2 46 5.0 0.1 6.6 5 tr|Q8BIV1|Q8BIV1_MOUSE Zinc finger protein 719 OS=Mus muscul
Domain annotation for each sequence (and alignments):
>> sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus OX=10090 GN=Trmt
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.3 0.0 1.8e-20 2.8e-17 1 68 [] 2 112 .. 2 112 .. 0.98
Alignments for each domain:
== domain 1 score: 63.3 bits; conditional E-value: 1.8e-20
BTGGCCC-B-TTTHH......C-..........................-HHHHHHHHH.TT---S-SS----S...........CHH CS
Trm112p 1 kllllniLaCpackg......pL..........................dwealvevaa.lglnelpkekpedy...........ell 44
kll++n+L+++ ++g pL +w+alv++a l+l+e+pke++e y ++l
sp|Q9DCG9|TR112_MOUSE 2 KLLTHNLLSSH-VRGvgtrgfPLrlqatevrinpvefnpefvarmipkvEWAALVQAADtLNLAEVPKEPTEGYehdetflrkmhHVL 88
789********.*********9999*************************************************************** PP
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
le+d++eg+L+Cp+ gr +pI+ G
sp|Q9DCG9|TR112_MOUSE 89 LEVDVLEGTLQCPESGRLFPISRG 112
*********************988 PP
>> sp|Q9D1C3|PREY_MOUSE Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.4 0.1 1.7e-10 2.7e-07 2 68 .] 50 88 .. 49 88 .. 0.95
Alignments for each domain:
== domain 1 score: 31.4 bits; conditional E-value: 1.7e-10
TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+ ll +L+Cp+ k+pL ++ ++eLv+++ g+aYpI dG
sp|Q9D1C3|PREY_MOUSE 50 PALLQFLVCPLSKKPL------------------------R----YEASTNELVNEELGIAYPIIDG 88
689*************........................5....9********************9 PP
>> sp|Q4VA45|CK095_MOUSE Uncharacterized protein C11orf95 homolog OS=Mus musculus OX=10090 PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 5 8e+03 41 60 .. 109 130 .. 86 139 .. 0.74
2 ? 9.0 0.0 0.0017 2.7 39 64 .. 257 293 .. 220 293 .. 0.76
3 ? 0.5 0.0 0.73 1.2e+03 41 60 .. 416 441 .. 387 462 .. 0.73
4 ? 0.9 0.0 0.55 8.8e+02 41 60 .. 575 606 .. 548 619 .. 0.75
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 5
S..CHHTTEECCCCEEEETTTT CS
Trm112p 41 y..ellleldieegeLvCpncg 60
+ e l+ + + +vC cg
sp|Q4VA45|CK095_MOUSE 109 WrlEYLMDFIPSRHGMVCMVCG 130
2666677788888889998887 PP
== domain 2 score: 9.0 bits; conditional E-value: 0.0017
--S...........CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 39 edy...........ellleldieegeLvCpncgraYp 64
e++ e l+ +d + LvC +cgra p
sp|Q4VA45|CK095_MOUSE 257 ERRlkeslqnwfraECLMDYDPRGNRLVCMACGRALP 293
33344444666888999*****************976 PP
== domain 3 score: 0.5 bits; conditional E-value: 0.73
S......CHHTTEECCCCEEEETTTT CS
Trm112p 41 y......ellleldieegeLvCpncg 60
y e l+eld + LvC cg
sp|Q4VA45|CK095_MOUSE 416 YqerwrlEYLMELDGCRRGLVCMVCG 441
04445666677777777777777776 PP
== domain 4 score: 0.9 bits; conditional E-value: 0.55
S............CHHTTEECCCCEEEETTTT CS
Trm112p 41 y............ellleldieegeLvCpncg 60
+ e l+ +d + LvC cg
sp|Q4VA45|CK095_MOUSE 575 ReqrrnyqprwrgEYLMDYDGSRRGLVCMVCG 606
15566677777777788888888888888887 PP
>> sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus musculus OX=10090 GN=Znf629 PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 2.1 0.82 1.3e+03 10 63 .. 375 382 .. 290 439 .. 0.69
2 ? 6.9 0.1 0.0073 12 41 63 .. 491 522 .. 446 523 .. 0.74
3 ? 3.5 0.0 0.083 1.3e+02 10 60 .. 715 846 .. 713 850 .. 0.53
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.82
-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 10 CpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraY 63
Cp+c + ++
sp|Q6A085|ZN629_MOUSE 375 CPVCGK----------------------------------------------TF 382
444444..............................................33 PP
== domain 2 score: 6.9 bits; conditional E-value: 0.0073
S...........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y...........ellleldieegeLvCpncgraY 63
+ ++++++e+ +vC++cg a+
sp|Q6A085|ZN629_MOUSE 491 GksfsqssnlitH--VRTHMDENLFVCSDCGKAF 522
2555566666444..88**************999 PP
== domain 3 score: 3.5 bits; conditional E-value: 0.083
-TTTHH......C-.........................................................................- CS
Trm112p 10 Cpackg......pL.........................................................................d 18
Cp ck+ +L +
sp|Q6A085|ZN629_MOUSE 715 CPECKKsfglssELlqhqkvhaggksqksselgksssvllehlrsplgarpyscsdcgasfldrlaltrhqeththerastpedtpsE 802
6666665533333355555555555555555555555555555555566666666666665554444444444444444444444444 PP
HHHHHHHHH.TT---.S-SS----S.CHHTTEECCCCEEEETTTT CS
Trm112p 19 wealvevaa.lglne.lpkekpedy.ellleldieegeLvCpncg 60
+ l+++++ +g ++ +pk + e+ +++ e+ + Cp+cg
sp|Q6A085|ZN629_MOUSE 803 SATLSTNQEdEGEAStPPKSSSH-GeEESPKTVSEKKPFLCPECG 846
44445555555555533333333.267778899999999999998 PP
>> sp|Q6V5K9|ZN474_MOUSE Zinc finger protein 474 OS=Mus musculus OX=10090 GN=Znf474 PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.7 0.0 0.036 58 48 63 .. 157 172 .. 114 173 .. 0.61
2 ? -1.3 0.1 2.6 4.2e+03 53 63 .. 218 228 .. 215 229 .. 0.89
3 ? 5.2 0.0 0.025 40 56 66 .. 284 294 .. 244 295 .. 0.83
Alignments for each domain:
== domain 1 score: 4.7 bits; conditional E-value: 0.036
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ + + L C+ncgr++
sp|Q6V5K9|ZN474_MOUSE 157 SAQAQLLPCENCGRTF 172
34459999******99 PP
== domain 2 score: -1.3 bits; conditional E-value: 2.6
EEEETTTTEEE CS
Trm112p 53 eLvCpncgraY 63
+L+C cgr +
sp|Q6V5K9|ZN474_MOUSE 218 TLICYICGREF 228
79******987 PP
== domain 3 score: 5.2 bits; conditional E-value: 0.025
ETTTTEEEEEE CS
Trm112p 56 CpncgraYpIk 66
Cpncgr++ ++
sp|Q6V5K9|ZN474_MOUSE 284 CPNCGRTFAVD 294
********986 PP
>> sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musculus OX=10090 GN=Snai2 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.0 0.0 0.24 3.9e+02 42 63 .. 122 138 .. 66 143 .. 0.76
2 ? 6.5 0.5 0.0096 15 43 63 .. 203 223 .. 145 224 .. 0.79
3 ? -0.4 0.0 1.4 2.2e+03 45 63 .. 233 251 .. 225 252 .. 0.79
Alignments for each domain:
== domain 1 score: 2.0 bits; conditional E-value: 0.24
CHHTTEECCCCEEEETTTTEEE CS
Trm112p 42 ellleldieegeLvCpncgraY 63
+ ie ++++C+ c+ +Y
sp|P97469|SNAI2_MOUSE 122 H-----AIEAEKFQCNLCNKTY 138
4.....78999*******9999 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.0096
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
++++ e + Cp+c+ra+
sp|P97469|SNAI2_MOUSE 203 GHIRTHTGEKPFSCPHCNRAF 223
44889999999*********9 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.4
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
l+++ + + +C+nc ++
sp|P97469|SNAI2_MOUSE 233 LQTHSDVKKYQCKNCSKTF 251
77888888889****8877 PP
>> tr|E9Q2S7|E9Q2S7_MOUSE Zinc finger protein 266 OS=Mus musculus OX=10090 GN=Zfp266 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 8.2 1.3e+04 50 63 .. 227 240 .. 220 241 .. 0.80
2 ? 10.9 0.3 0.00041 0.66 19 63 .. 321 380 .. 300 381 .. 0.82
3 ? 2.5 0.7 0.18 2.8e+02 30 63 .. 449 492 .. 388 493 .. 0.76
4 ? 2.7 0.2 0.15 2.3e+02 46 63 .. 531 548 .. 500 579 .. 0.65
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 8.2
CCCEEEETTTTEEE CS
Trm112p 50 eegeLvCpncgraY 63
e + C++c a+
tr|E9Q2S7|E9Q2S7_MOUSE 227 NEKPFECTDCETAF 240
567789****9998 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00041
HHHHHHHHH.TT---S-SS----S..............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 19 wealvevaa.lglnelpkekpedy..............ellleldieegeLvCpncgraY 63
w+a+ ++ +++ ++ e +++ ++ ++++ ee +vC++cg a+
tr|E9Q2S7|E9Q2S7_MOUSE 321 WKAFTVSSHlTQYVSIHTEEKSKVckicgksfanysrlSAHVKTHNEEKPFVCKECGKAF 380
777777777777777666666666788899999999997779***************999 PP
== domain 3 score: 2.5 bits; conditional E-value: 0.18
---S-SS----S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 30 lnelpkekpedy............ellleldieegeLvCpncgraY 63
+ ++++ +++ + ++++ e + C++cg a+
tr|E9Q2S7|E9Q2S7_MOUSE 449 HTGIKPYECKECgkaftqysglatH--VRIHSGEKPFACKECGKAF 492
3336666666667777777777443..7888999999999999988 PP
== domain 4 score: 2.7 bits; conditional E-value: 0.15
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++ e +vC+ cg a+
tr|E9Q2S7|E9Q2S7_MOUSE 531 KIHSGEKPFVCNICGKAF 548
455555555565555555 PP
>> sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus OX=10090 GN=Trim67 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.9 0.1 0.13 2e+02 50 63 .. 1 14 [. 1 15 [. 0.88
2 ? 0.7 0.0 0.63 1e+03 42 61 .. 140 159 .. 96 161 .. 0.76
3 ? 4.4 0.1 0.045 72 8 60 .. 231 306 .. 229 307 .. 0.80
Alignments for each domain:
== domain 1 score: 2.9 bits; conditional E-value: 0.13
CCCEEEETTTTEEE CS
Trm112p 50 eegeLvCpncgraY 63
+e+eL Cp cg +
sp|Q505D9|TRI67_MOUSE 1 MEEELKCPVCGSLF 14
699********988 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.63
CHHTTEECCCCEEEETTTTE CS
Trm112p 42 ellleldieegeLvCpncgr 61
++ l+ + +++Cp c+r
sp|Q505D9|TRI67_MOUSE 140 AACSSLCSSSSSITCPQCHR 159
56777888899999***988 PP
== domain 3 score: 4.4 bits; conditional E-value: 0.045
-B-TTTHHC--HHHHHHHHH.TT---S-SS----S.............................CHHTTEECCCCEEEETTTT CS
Trm112p 8 LaCpackgpLdwealvevaa.lglnelpkekpedy.............................ellleldieegeLvCpncg 60
L+C+ +gp +++ l ++ +p+++pe ++ e+++e+ +++C +c+
sp|Q505D9|TRI67_MOUSE 231 LKCHPSRGPF-------AKHrLVQPPPPPTPPEATpavtgtstassaggcrspggagasaprkfPTCPEHEMENYSMYCVSCR 306
7788888888.......55555566677777777799999999999999999999999999999567789*********9997 PP
>> tr|Q78F42|Q78F42_MOUSE Zinc finger protein 324 OS=Mus musculus OX=10090 GN=Zfp324 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.1 0.027 43 46 63 .. 367 384 .. 326 385 .. 0.81
2 ? 5.0 0.2 0.029 46 47 63 .. 452 468 .. 404 469 .. 0.72
3 ? 4.4 0.1 0.046 73 47 64 .. 508 525 .. 476 525 .. 0.85
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.027
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++ +e ++ C++cg a+
tr|Q78F42|Q78F42_MOUSE 367 RIHTVEKSFHCNECGKAF 384
478899*********999 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.029
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
++ e + Cp+cgra+
tr|Q78F42|Q78F42_MOUSE 452 VHTGEKPFSCPHCGRAF 468
45556889********9 PP
== domain 3 score: 4.4 bits; conditional E-value: 0.046
EECCCCEEEETTTTEEEE CS
Trm112p 47 ldieegeLvCpncgraYp 64
++ e +vC+ cgra++
tr|Q78F42|Q78F42_MOUSE 508 IHTGEKPFVCTQCGRAFR 525
56667889********96 PP
>> tr|Q8BIN3|Q8BIN3_MOUSE Expressed sequence AI854703 OS=Mus musculus OX=10090 GN=AI854703 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.1 0.2 0.003 4.9 52 66 .. 66 80 .. 28 82 .. 0.78
2 ? 6.2 0.1 0.012 20 48 66 .. 90 108 .. 83 110 .. 0.78
3 ? -0.1 0.3 1.1 1.8e+03 55 64 .. 125 134 .. 116 134 .. 0.89
4 ? -1.4 0.2 2.8 4.4e+03 56 63 .. 168 175 .. 167 176 .. 0.85
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.003
CEEEETTTTEEEEEE CS
Trm112p 52 geLvCpncgraYpIk 66
++vCp+cg a+ +k
tr|Q8BIN3|Q8BIN3_MOUSE 66 AAFVCPECGKAFSVK 80
579*********997 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.012
ECCCCEEEETTTTEEEEEE CS
Trm112p 48 dieegeLvCpncgraYpIk 66
+ e + Cp+cgr++ k
tr|Q8BIN3|Q8BIN3_MOUSE 90 HTGERPFACPECGRCFSLK 108
55667788********876 PP
== domain 3 score: -0.1 bits; conditional E-value: 1.1
EETTTTEEEE CS
Trm112p 55 vCpncgraYp 64
+C cgr+++
tr|Q8BIN3|Q8BIN3_MOUSE 125 QCAQCGRCFR 134
69*****996 PP
== domain 4 score: -1.4 bits; conditional E-value: 2.8
ETTTTEEE CS
Trm112p 56 CpncgraY 63
Cp+cg +
tr|Q8BIN3|Q8BIN3_MOUSE 168 CPRCGKSF 175
9***9887 PP
>> sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus OX=10090 GN=Sh3rf1 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 5.5 0.0098 16 3 60 .. 5 53 .. 3 55 .. 0.76
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.0098
GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+
sp|Q69ZI1|SH3R1_MOUSE 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVGSRNELRCPECR 53
69*************..........12223344444...25559999**************8 PP
>> sp|Q8BZT2|SH3R2_MOUSE E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus OX=10090 GN=Sh3rf2 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.3 5.1 0.011 18 1 60 [. 3 53 .. 3 57 .. 0.68
Alignments for each domain:
== domain 1 score: 6.3 bits; conditional E-value: 0.011
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
+l+ll++L Cp+c +L +v+a + lp +++ l ++ + + eL Cp+c+
sp|Q8BZT2|SH3R2_MOUSE 3 DLTLLDLLECPVCFEKL------DVTA----KvLP---CQHTfckPCLQRIFKAHKELRCPECR 53
689**************......2221....1122...33335544444567788********8 PP
>> sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus OX=10090 GN=Trim9 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.2 0.2 0.025 39 48 64 .. 2 18 .. 1 18 [. 0.88
2 ? 1.8 4.1 0.3 4.7e+02 8 60 .. 126 245 .. 124 247 .. 0.64
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.025
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+++e+eL Cp cg Y+
sp|Q8C7M3|TRIM9_MOUSE 2 EEMEEELKCPVCGSFYR 18
689**********9885 PP
== domain 2 score: 1.8 bits; conditional E-value: 0.3
-B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S....................................... CS
Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy....................................... 41
++Cp+c+ L +e ++++ + + + l+ +++e++
sp|Q8C7M3|TRIM9_MOUSE 126 ITCPQCHRSLilddrglrgfpknrVLEGVIDRYQqSKAAALKCQLCEKApkeatvmceqcdvfycdpcrlrchpprgplakhrlvppa 213
5788888877777777777777776777777777777777777777777766665555555555555555555555555555555555 PP
.............CHHTTEECCCCEEEETTTT CS
Trm112p 42 .............ellleldieegeLvCpncg 60
+++ ++ e+ +++C c+
sp|Q8C7M3|TRIM9_MOUSE 214 qgrvsrrlsprkvSTCTDHELENHSMYCVQCK 245
55556666666666666677777777776665 PP
>> tr|Q8BIV1|Q8BIV1_MOUSE Zinc finger protein 719 OS=Mus musculus OX=10090 GN=Zfp719 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 0.0 0.18 2.8e+02 47 63 .. 278 294 .. 230 295 .. 0.80
2 ? 1.1 1.7 0.48 7.7e+02 47 66 .. 418 437 .. 314 439 .. 0.67
3 ? 5.0 0.1 0.029 46 43 63 .. 470 490 .. 440 491 .. 0.79
4 ? 4.5 0.6 0.041 66 33 63 .. 590 630 .. 511 631 .. 0.77
5 ? -1.7 0.1 3.4 5.5e+03 51 63 .. 674 686 .. 650 687 .. 0.71
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.18
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
++ +e +++C+ cg ++
tr|Q8BIV1|Q8BIV1_MOUSE 278 TNSMETSFICHTCGKTF 294
67899*********988 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.48
EECCCCEEEETTTTEEEEEE CS
Trm112p 47 ldieegeLvCpncgraYpIk 66
++ e Cp+cg + Ik
tr|Q8BIV1|Q8BIV1_MOUSE 418 FHTGEKPYECPDCGKSFSIK 437
44455555688888888886 PP
== domain 3 score: 5.0 bits; conditional E-value: 0.029
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
+ ++++ ++ ++vC++cg a+
tr|Q8BIV1|Q8BIV1_MOUSE 470 VHHQIHTDRRSFVCSDCGMAF 490
4479999***********999 PP
== domain 4 score: 4.5 bits; conditional E-value: 0.041
S-SS----S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 33 lpkekpedy..........ellleldieegeLvCpncgraY 63
+++k++d ++ ++++ e +vC++cg a+
tr|Q8BIV1|Q8BIV1_MOUSE 590 EKPYKCSDCgksfrrashlKVHHRIHTGEKPFVCSECGKAF 630
3444444448888888877444788899999******9998 PP
== domain 5 score: -1.7 bits; conditional E-value: 3.4
CCEEEETTTTEEE CS
Trm112p 51 egeLvCpncgraY 63
e vC +cg a+
tr|Q8BIV1|Q8BIV1_MOUSE 674 EKPYVCAECGKAF 686
5555899999988 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 22289 (11757923 residues searched)
Passed MSV filter: 1221 (0.0547804); expected 445.8 (0.02)
Passed bias filter: 893 (0.0400646); expected 445.8 (0.02)
Passed Vit filter: 112 (0.0050249); expected 22.3 (0.001)
Passed Fwd filter: 43 (0.0019292); expected 0.2 (1e-05)
Initial search space (Z): 22289 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.33u 0.01s 00:00:00.34 Elapsed: 00:00:00.10
# Mc/sec: 7995.39
//
[ok]