# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-13 48.1 1.7 3.2e-13 47.4 1.7 1.4 1 tr|M1Y3V1|M1Y3V1_NATM8 UPF0434 protein Nmlp_3063 OS=Natronom
------ inclusion threshold ------
0.5 8.4 7.7 0.69 7.9 1.5 3.2 3 tr|M1XKG4|M1XKG4_NATM8 Transcription initiation factor IIB O
Domain annotation for each sequence (and alignments):
>> tr|M1Y3V1|M1Y3V1_NATM8 UPF0434 protein Nmlp_3063 OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.4 1.7 2.4e-16 3.2e-13 1 68 [] 2 49 .. 2 49 .. 0.96
Alignments for each domain:
== domain 1 score: 47.4 bits; conditional E-value: 2.4e-16
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
k++ll+iL+Cp++k +L++e++ e +i+eg LvC++cg +YpI+dG
tr|M1Y3V1|M1Y3V1_NATM8 2 KETLLDILCCPLDKAELELEVIREDDD--------------------EILEGRLVCTECGEVYPIEDG 49
689**************99***99997....................9*******************9 PP
>> tr|M1XKG4|M1XKG4_NATM8 Transcription initiation factor IIB OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.9 1.5 0.00051 0.69 33 60 .. 18 47 .. 3 50 .. 0.60
2 ? 6.8 1.0 0.0011 1.5 8 62 .. 41 67 .. 41 67 .. 0.91
3 ? -0.2 0.0 0.17 2.3e+02 22 52 .. 293 336 .. 283 337 .] 0.71
Alignments for each domain:
== domain 1 score: 7.9 bits; conditional E-value: 0.00051
S-SS----S..CHHTTEECCCCEEEETTTT CS
Trm112p 33 lpkekpedy..ellleldieegeLvCpncg 60
++e e e e ++e eLvCp+cg
tr|M1XKG4|M1XKG4_NATM8 18 AAEESNESErtENEREAGEDESELVCPECG 47
333333333443334577899********7 PP
== domain 2 score: 6.8 bits; conditional E-value: 0.0011
-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEE CS
Trm112p 8 LaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgra 62
L+Cp c g+L + d e+ge vC++cg++
tr|M1XKG4|M1XKG4_NATM8 41 LVCPECGGRL------------------------T----ADSEHGETVCTECGLV 67
89********........................6....89999********985 PP
== domain 3 score: -0.2 bits; conditional E-value: 0.17
HHHHHH.TT---S-SS----S............CHHTTEECCCC CS
Trm112p 22 lvevaa.lglnelpkekpedy............ellleldieeg 52
v++a l ++++ ++ +++ ++lle++++ g
tr|M1XKG4|M1XKG4_NATM8 293 AVYAASlLTNEKVTQNAVSEVadisevtirnryHELLEVEQDAG 336
55666666666666666665568888888888899999998766 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 104 (0.0381932); expected 54.5 (0.02)
Passed bias filter: 91 (0.033419); expected 54.5 (0.02)
Passed Vit filter: 14 (0.00514139); expected 2.7 (0.001)
Passed Fwd filter: 2 (0.000734484); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01
# Mc/sec: 5505.23
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